View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3208_low_7 (Length: 439)
Name: NF3208_low_7
Description: NF3208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3208_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 185 - 420
Target Start/End: Complemental strand, 50632887 - 50632665
Alignment:
| Q |
185 |
acatgatagtagtgtctttgttcaagatttgctgaatatgttttgatctttgaaaactacattacatacaatcatgaatattttggtatttattgaagta |
284 |
Q |
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| T |
50632887 |
acatgatagtagtgtctttgttcaagatttgctgaatatgttttgatctttgaaaact-----acatacaatcatgcatattttggtatttattgaagta |
50632793 |
T |
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| Q |
285 |
tgaaatctccttgtaagttgtaaataagcagcagtatgaatctcagtaagagaacagttaattgaacacnnnnnnnncattatctagaaggatctatagt |
384 |
Q |
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| T |
50632792 |
tgaaatctcc-------ttgtaaataagcagcagtatgaatctcagtaagagaacagttaattgaacac-aaaaaaacattatctagaaggatctatagt |
50632701 |
T |
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| Q |
385 |
ttgaaatcttacagctacgtggaagtaggaacagaa |
420 |
Q |
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| T |
50632700 |
ttgaaatcttacagctacgtggaagtaggaacagaa |
50632665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 50633576 - 50633451
Alignment:
| Q |
69 |
ctactatatattagataaaactcaaaatattgtctaaagaataaagtgtgattaacctaaaagcatctttcaa-aaaacaaaactattagagcacctacc |
167 |
Q |
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| T |
50633576 |
ctactatatattagataaaactcaaaatattatctaaagaataaagtgtgattaacctaaaagcagctttcaaaaaaacaaaactattagagcacctacc |
50633477 |
T |
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| Q |
168 |
atttcattccaaatataacatgatag |
193 |
Q |
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| T |
50633476 |
atttcattccaaatataacatgatag |
50633451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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