View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3209_high_4 (Length: 313)
Name: NF3209_high_4
Description: NF3209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3209_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 9869341 - 9869622
Alignment:
| Q |
11 |
cacagatcaaagttttacagaataacagcatagaagccaccatctagtttactaattcataaaattccaactacattgtaatgcaatcaaacgaacagtc |
110 |
Q |
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| T |
9869341 |
cacagatcaaagttttacagaataacagcatagaagccacc---tagtttactaattcataaaattccaactacattgtaatgcaatcaaacgaacagtc |
9869437 |
T |
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| Q |
111 |
tagtcatcatcttcttcagaatctgataactctgcatcctcatcatcagactcattttcactctcggattcactgactacatatttcatttgagtacgat |
210 |
Q |
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| T |
9869438 |
tagtcgtcgtcttcttcaaaatctgataactctgcatcctcatcatcagactcattgtcactctcggattcactgactacatatttcatttgagtacgat |
9869537 |
T |
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| Q |
211 |
tggccctctgaggtctagcccttgctggctgaggtgcaatctcaaccacctcatcctctgcagtaggagagttagaagtagagcc |
295 |
Q |
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| T |
9869538 |
tggccctctgaggtctagcccttgctggctgaggtgcaatctcaaccacctcatcctctgcagtaggagagttagaagtagagcc |
9869622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 121 - 288
Target Start/End: Original strand, 38835004 - 38835168
Alignment:
| Q |
121 |
cttcttcagaatctgataactctgcatcctcatcatcagactcattttcactctcggattcactgactacatatttcatttgagtacgattggccctctg |
220 |
Q |
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| T |
38835004 |
cttctacaaaatctgataattctgcatactcatcg---gaatcattgtcactctcgtatccactcactacatatttgttttgattaggattagccccgtg |
38835100 |
T |
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| Q |
221 |
aggtctagcccttgctggctgaggtgcaatctcaaccacctcatcctctgcagtaggagagttagaag |
288 |
Q |
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| T |
38835101 |
aggcttagcccttgctggctgcggtgcgatctcaaccacctcattctttgctataggagagttagaag |
38835168 |
T |
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