View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3209_low_1 (Length: 643)
Name: NF3209_low_1
Description: NF3209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3209_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 17 - 633
Target Start/End: Original strand, 27598150 - 27598767
Alignment:
| Q |
17 |
ataccaatggaaacaaaacaattcgggaagtctctatttattcatcttaacattaaccaacaatgattaaatgtttttcaaacaagaaattaataaaaat |
116 |
Q |
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| T |
27598150 |
ataccaatggaaacaaaataattcaggaagtctctatttattcatcttaacattaaccaacaatgattaaatgtttttcaaacaagaaattaataaaaat |
27598249 |
T |
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| Q |
117 |
acatgaagaaataaaattattcccgtgtccgacgctaagcatggacacatttaaaa-caaaagcaataaaattaaaccaaacataaattcaacaattgaa |
215 |
Q |
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| T |
27598250 |
acatgaagaaataaaattattcccgtgtccgacgctaagcatggacacatttaaaaacaaaagcaataaaattaaaccaaacataaattcaacaattgaa |
27598349 |
T |
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| Q |
216 |
atatagagactcataaaaaacaacaaagcaaatgatgatcatttttcaagagacttgttgatcaaggccagaaaccatgtggcacattgttaccaaatgg |
315 |
Q |
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| T |
27598350 |
atatagagactgataaaaaacaacaaagtaaatgatgatcatttttcaagagacttgttgatcaaggccagaaaccatgtggcacattgttaccaaatgg |
27598449 |
T |
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| Q |
316 |
tacattgttaccattttcaaatggtaccatatcaccaatgttgttgttggtgaaatccattggccaattctgcctttgcattggatcagcaatgttctcc |
415 |
Q |
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| T |
27598450 |
tacattgttaccattttcaaatggtaacacatcaccaatgttgttgttggtgaaatccattggccaatgctgcctttgcattggatcagcaatgttctcc |
27598549 |
T |
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| Q |
416 |
attccctgctcccctccactcacatttccagcttggttttgaacaacctcttcagcttgagactgattaagtttcctatcgatctgtttcaagttctgat |
515 |
Q |
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| T |
27598550 |
attccctgctcccctccactcacatttccagcttggttttgaacaacctcttcagcttgagactgatcgagtttcctatcgatctgtttcaagttctgat |
27598649 |
T |
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| Q |
516 |
cgatcaaccatgagatatcattgagatcatccatgccaacatggtcaaaaatctgaccagcattaaggcattgaaacatcagatgggtcatttccttcct |
615 |
Q |
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| T |
27598650 |
cgatcaaccatgagatatcattgagatcatccatgccaacatggtcaaaaatctgaccagcattaaggcattgaaacatcagatgggtcatttccttcct |
27598749 |
T |
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| Q |
616 |
tttgttgtcgttcctttg |
633 |
Q |
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| T |
27598750 |
tttgttgtcgttcctttg |
27598767 |
T |
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