View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3209_low_3 (Length: 499)
Name: NF3209_low_3
Description: NF3209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3209_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 147 - 489
Target Start/End: Complemental strand, 42626302 - 42625959
Alignment:
| Q |
147 |
tgataaagaaacttcagctaagagaaaaacacatgtgccatctatgcttgnnnnnnnn-ttgtgtagatttttcaacgagtaaatgagcattttgattct |
245 |
Q |
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| T |
42626302 |
tgataaagaaacttcagctaagagaaaaacacatgtgccatctatgcttgaaaaaaaaattgtgtagacttttcaacgagtaaatgagcattttgattct |
42626203 |
T |
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| Q |
246 |
taggttaaagaacgccaatatttgtcttgaaacagaaagaaactgttcaaaacaatacacatgtctatcttataaaatagattatattgatgaagggata |
345 |
Q |
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| T |
42626202 |
taggttaaagaacgccaatatttgtcttgaaacagaaagaaactgttcaaaacaatacacatgtctatcttataaaatagattatattgatgaagggata |
42626103 |
T |
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| Q |
346 |
atttcacgacgttttttaattgactaaatttccattttataaatatgattgaattacacaggaattataatttggaagaacaaaatggtgcttgactcaa |
445 |
Q |
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| T |
42626102 |
atttcacgacgttttttaattgactaaatttccattttataaatatgattgaattacacaggaattataatttggaagaacaaaatggtgcttgactcaa |
42626003 |
T |
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| Q |
446 |
ctagaatgctggcctacttatttgagcatttaactgagtctgtg |
489 |
Q |
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| T |
42626002 |
ctagaatgctggcctacttatttgagcatttaactgagtctgtg |
42625959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 42626502 - 42626370
Alignment:
| Q |
17 |
atttaccacacgagaatattatcttctccttgaaccnnnnnnntaaataaattatcttctcctttgacgcatgtaaatataacttcaaataattttcgca |
116 |
Q |
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| T |
42626502 |
atttaccacacgagaatattatcttctccttgaaccaaaaaaataaataaattatcttctccttagacgcatataaaaataacttcaaataatttttgca |
42626403 |
T |
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| Q |
117 |
aggacgatttagtgagacatttgatatgcatga |
149 |
Q |
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| T |
42626402 |
aggacgattcagtgagacatttgatatgcatga |
42626370 |
T |
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