View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3209_low_5 (Length: 274)
Name: NF3209_low_5
Description: NF3209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3209_low_5 |
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| [»] scaffold0756 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 36 - 268
Target Start/End: Original strand, 9869057 - 9869292
Alignment:
| Q |
36 |
tagaaagatggatatgtagtgttgaagtagacacaattgtatgtagcaacaaagaaatgaaaaactcctgagtcagttttgtaggcagggattcataaga |
135 |
Q |
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| T |
9869057 |
tagaaagatggatatgtagtgttgatgtagacacaattgtatgtagcaacaaagaaatggaaaactcctgagtcagttttgtaggcagggattcataaga |
9869156 |
T |
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| Q |
136 |
gcgtaaatgatgcacaa---gtgctatataatatataagaaatcctcaatatatacaaaaactaacttctgaactatttaattcaaggaatagaaaaaat |
232 |
Q |
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| T |
9869157 |
gcgtaaatgatgcacaattagtgctatataatatataagaaatcctcaatatatacaaaaactaacttctgaactatttaattcaaggaatagaaaaaat |
9869256 |
T |
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| Q |
233 |
atggttagagtcataaatctgatccattcatgcaaa |
268 |
Q |
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| T |
9869257 |
atggttagagtcataaatctgatccattcatgcaaa |
9869292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0756 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0756
Description:
Target: scaffold0756; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 266
Target Start/End: Original strand, 5016 - 5118
Alignment:
| Q |
167 |
ataagaaatcctcaatatatacaaaaactaacttctgaactatttaattcaaggaatagaaaaa---atatggttagagtcataaatctgatccattcat |
263 |
Q |
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| T |
5016 |
ataagtaatcctcaatttatacaaaaactaacttgtgaacaattcaattcaaggaatagaaaaaaatatacggttagagtcgtaaatccgattcattaat |
5115 |
T |
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| Q |
264 |
gca |
266 |
Q |
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| T |
5116 |
gca |
5118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 266
Target Start/End: Complemental strand, 20106247 - 20106135
Alignment:
| Q |
158 |
atataatatataagaaatcctcaatatatacaaaaactaacttctgaactatttaattcaaggaatagaa----aaaatatggttagagtcataaatctg |
253 |
Q |
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| T |
20106247 |
atataagaaataagtaatcgtcaatttatacaaaaactaacttgtgaacaattcaattcaaggaatagaaaaaaaaaatacggttagagtcgtaaatccg |
20106148 |
T |
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| Q |
254 |
atccattcatgca |
266 |
Q |
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| T |
20106147 |
attcattaatgca |
20106135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 20104715 - 20104651
Alignment:
| Q |
167 |
ataagaaatcctcaatatatacaaaaactaacttctgaactatttaattcaaggaatagaaaaaa |
231 |
Q |
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| T |
20104715 |
ataagtaatcctcaatttatacaaaaactaaattgtgaacaattcaattcaaggaatagaaaaaa |
20104651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 33365632 - 33365665
Alignment:
| Q |
167 |
ataagaaatcctcaatatatacaaaaactaactt |
200 |
Q |
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| T |
33365632 |
ataagtaatcctcaatatatacaaaaactaactt |
33365665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 242
Target Start/End: Original strand, 32176680 - 32176805
Alignment:
| Q |
123 |
gggattcataagagcgtaaatgatgcacaa---gtgctatataatatataag-------aaatcctcaatatatacaaaaactaacttctgaactattta |
212 |
Q |
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| T |
32176680 |
gggattcagaaaagcgtaaatgatgcataattagtgctatataatatataagaactaagaaatcctcaatatacacaaaa--taa-ttctgaacaattta |
32176776 |
T |
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| Q |
213 |
attcaaggaatagaaaaaatatggttagag |
242 |
Q |
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| T |
32176777 |
attcaagg-atagaaaaaatatggtcagag |
32176805 |
T |
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