View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3210-Insertion-12 (Length: 389)
Name: NF3210-Insertion-12
Description: NF3210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3210-Insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 10486477 - 10486108
Alignment:
| Q |
8 |
aaatatagtatttattttgtaattgatgccagggttcaccnnnnnnnaatatatagaactcattaacttcaagtgaactttctgtaacatgccctattta |
107 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10486477 |
aaatatagtatttattttgtaattggtgccagggttcaccttattttaatatagaaaactcattaacttcaagttaactttctgtaacatgccctattta |
10486378 |
T |
|
| Q |
108 |
gaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatgggttccatcccatattattctagt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10486377 |
gaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatgggttccatcccatattattctagt |
10486278 |
T |
|
| Q |
208 |
agatggacttttgcacgaacccacaaaaattcttgtaccatttatatttatggtttctccacatctagcacgattgtcatagttgtactcccctccatag |
307 |
Q |
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| T |
10486277 |
agatggacttttgcacgaacccacaaaaattcttgtaccatttatatttatggtttctccacatctagcacgattgtcatagttgtactcccctccatag |
10486178 |
T |
|
| Q |
308 |
ccacaacatgccactagtggaagctcaaaccctagattgtaatgaagctttaaaattaataacatatatg |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10486177 |
ccacaacatgccactagtggaagctcaaaccctagattgcaatgaagctttaaaattaataacatatatg |
10486108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 70 - 383
Target Start/End: Complemental strand, 10500857 - 10500543
Alignment:
| Q |
70 |
ttaacttcaagtga--actttctgtaacatgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattag |
167 |
Q |
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|||||||||||||| ||||| |||||||||||||||| || ||||| |||||||| || ||||||||| ||||||||||||||||||||||||| |||| |
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| T |
10500857 |
ttaacttcaagtgatcactttttgtaacatgccctattgagtggaataggaggatccgtaaaagctccattagagatttgatcaaagacaatcttgttag |
10500758 |
T |
|
| Q |
168 |
ctgcctctgtgtaatgggttccatcccatattattctagtagatggacttttgcacgaacccacaaaaattcttgtaccatttatatttatggtttctcc |
267 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||| ||||| |||| || |||||||||| | | ||||||||||||| ||||||||| |||| |
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| T |
10500757 |
ctgcctctgtgtaatgagtaccatcccatattattctagttgatggttttttacatgaacccacaacagtgtttgtaccatttatgtttatggttgctcc |
10500658 |
T |
|
| Q |
268 |
acatctagcacgattgtcatagttgtactcccctccatagccacaacatgccactagtggaagctcaaaccctagattgtaatgaagctttaaaattaat |
367 |
Q |
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||| | ||||||| ||| ||||||||||| ||||||| ||||||||| ||||| |||||||| |||||||||| || |||| ||| ||| |||||||| |
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| T |
10500657 |
acaaccagcacgaatgttatagttgtactttcctccattgccacaacaagccaccagtggaagttcaaaccctacatgttaatcaagattt-aaattaat |
10500559 |
T |
|
| Q |
368 |
aacatatatgcattat |
383 |
Q |
| |
|
|||||| || |||||| |
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|
| T |
10500558 |
aacataaatacattat |
10500543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 94 - 363
Target Start/End: Complemental strand, 10503902 - 10503639
Alignment:
| Q |
94 |
acatgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatgggttccatcc |
193 |
Q |
| |
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||||||||||||||||| ||| |||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||| |||||| | |||| |||||| |
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| T |
10503902 |
acatgccctatttagagaaataggaggatcagagaaagctccggtagatatttgatcaaagacaatcttgttagctgcttctgtgaagtgggaaccatcc |
10503803 |
T |
|
| Q |
194 |
catattattctagtagatggacttttgcacgaacccacaaaaattcttgtaccatttatatttatggtttctccacatctagcacgattgtcatagttgt |
293 |
Q |
| |
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|| || |||||||||||||| |||| ||||| || ||| |||| ||||||||||||| ||||||||||||||||| | | ||||| | ||||| |
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|
| T |
10503802 |
caaatgattctagtagatgggtttttacacgatccagcaacaatttttgtaccatttatgtttatggtttctccacagccaacacgaat------gttgt |
10503709 |
T |
|
| Q |
294 |
actcccctccatagccacaacatgccactagtggaagctcaaaccctagattgtaatgaagctttaaaat |
363 |
Q |
| |
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||| ||||||||||||||||||||||| ||||||||||||| |||| || ||||||||||||||||| |
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| T |
10503708 |
actttcctccatagccacaacatgccacatgtggaagctcaaatcctacatattaatgaagctttaaaat |
10503639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 70 - 333
Target Start/End: Complemental strand, 10509337 - 10509078
Alignment:
| Q |
70 |
ttaacttcaagtga--actttctgtaacatgccctatttagaggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattag |
167 |
Q |
| |
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||||||| |||||| ||||||| ||||||||||||| ||||| ||| |||||||| ||||| |||||||| ||||||| ||||||||||| |||| |
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|
| T |
10509337 |
ttaacttgaagtgatcactttctataacatgccctatctagagaaataggaggatcattgaaaactccagtaaggatttgagaaaagacaatctcgttag |
10509238 |
T |
|
| Q |
168 |
ctgcctctgtgtaatgggttccatcccatattattctagtagatggacttttgcacgaacccacaaaaattcttgtaccatttatatttatggtttctcc |
267 |
Q |
| |
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|||| ||||||||||| ||||||||||| |||||||| |||||| ||||||| ||||| ||| |||| ||||||||||||| ||||||| | |||| |
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|
| T |
10509237 |
ctgcttctgtgtaatgaacaccatcccatatgattctagttgatggatttttgcatgaacctgcaacaatttttgtaccatttatgtttatggatgctcc |
10509138 |
T |
|
| Q |
268 |
acatctagcacgattgtcatagttgtactcccctccatagccacaacatgccactagtggaagctc |
333 |
Q |
| |
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||| | | ||| || ||| ||||| ||||||||||||||||||||||| | ||||||||| |
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|
| T |
10509137 |
acaaccaacac------caatgttatactctcctccatagccacaacatgccacaaatggaagctc |
10509078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 10544986 - 10545071
Alignment:
| Q |
110 |
ggaatgggaggatctgtgaaagctccagtagagatttgatcaaagacaatcttattagctgcctctgtgtaatgggttccatccca |
195 |
Q |
| |
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|||||||||||||||| |||||| |||||||| ||||||||||||| || || |||||||| || ||||| || |||||||||| |
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| T |
10544986 |
ggaatgggaggatctgagaaagccccagtagaaatttgatcaaagataaatttgttagctgcttcagtgtagtgaattccatccca |
10545071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Original strand, 10545163 - 10545219
Alignment:
| Q |
287 |
tagttgtactcccctccatagccacaacatgccactagtggaagctcaaaccctaga |
343 |
Q |
| |
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|||||||||||||||||| | |||||||||| || ||||| |||||||||||||| |
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|
| T |
10545163 |
tagttgtactcccctccaaaaccacaacatgtaaccagtggctgctcaaaccctaga |
10545219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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