View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3210-Insertion-14 (Length: 248)
Name: NF3210-Insertion-14
Description: NF3210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3210-Insertion-14 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 6539146 - 6538910
Alignment:
| Q |
8 |
gtaacatagcatctatattactacatagattctactattaactattaagaagaacaaggtgatatcaaactctcttggtagacttccggaatcatccaat |
107 |
Q |
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| T |
6539146 |
gtaacatagcatctatattactacatagattctactattaactattaagaataaca----gatatcaaactctcttggtagacttccggaatcatccaat |
6539051 |
T |
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| Q |
108 |
tatggcgggggcacattggaattttaagagtcttaaaagtaccatccgtagaattgtaaacaaccaactttgactttaactcgagcagcacctgatcatc |
207 |
Q |
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| T |
6539050 |
tatggcaggggcgcattggaattttaagagtcttaaaagtaccatccgtagaattgtaaacaaccaactttgactttaactcgagcagcacctgattatc |
6538951 |
T |
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| Q |
208 |
ctcataaacataaagtgccttcaaatgaggataagaattaa |
248 |
Q |
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| T |
6538950 |
ctcataaacataaagtgccttcgaatgaggataagaattaa |
6538910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 7174126 - 7174328
Alignment:
| Q |
17 |
catctatattactacatagattctactattaactattaagaagaacaaggtgatatcaaactctcttggtagacttccggaatcatccaattatggcggg |
116 |
Q |
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||||||||||||||||||||||||| ||||||||| | || | |||||||||||||||||||||||| ||||||||||||||||||||| | |||| |
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| T |
7174126 |
catctatattactacatagattctattattaactactcagca---caaggtgatatcaaactctcttggcagacttccggaatcatccaatcacggcgtc |
7174222 |
T |
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| Q |
117 |
ggcacattggaattttaagagtcttaaaagtaccatccgtagaattgtaaacaaccaactttgactttaactcgagcagcacctgatcatcctcataaac |
216 |
Q |
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| T |
7174223 |
------tttgaattttaagagtcttaaaagtaccatctctagaattgtaaacaaccaacttcatcatatactctagcagcacttgatcatcctcataaac |
7174316 |
T |
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| Q |
217 |
ataaagtgcctt |
228 |
Q |
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| T |
7174317 |
ataaagtgcctt |
7174328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 7199833 - 7199933
Alignment:
| Q |
128 |
attttaagagtcttaaaagtaccatccgtagaattgtaaacaaccaactttgactttaactcgagcagcacctgatcatcctcataaacataaagtgcct |
227 |
Q |
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| T |
7199833 |
atttcaagactcttaaaagtaccatccctagaattgtaaagaaccaactttgactgacactctagcagcacttgatcatcctcataaacataaaatgcct |
7199932 |
T |
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| Q |
228 |
t |
228 |
Q |
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| T |
7199933 |
t |
7199933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 7160617 - 7160702
Alignment:
| Q |
139 |
cttaaaagtaccatccgtagaattgtaaacaaccaactttgactttaactcgagcagcacctgatcatcctcataaacataaagtg |
224 |
Q |
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| T |
7160617 |
cttaaaagtaccatctctataattgtaaacaaccaacttggacgtcatatcaagtagcacttgatcatcctcagaaacataaagtg |
7160702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 11237963 - 11237918
Alignment:
| Q |
48 |
actattaagaagaacaaggtgatatcaaactctcttggtagacttc |
93 |
Q |
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| T |
11237963 |
actattattaagaacatggtgatatcaaactctcttggtagacttc |
11237918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 7156043 - 7156080
Alignment:
| Q |
139 |
cttaaaagtaccatccgtagaattgtaaacaaccaact |
176 |
Q |
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| T |
7156043 |
cttaaaagtaccatctgttgaattgtaaacaaccaact |
7156080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 7199768 - 7199817
Alignment:
| Q |
57 |
aagaacaaggtgatatcaaactctcttggtagacttccggaatcatccaa |
106 |
Q |
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| T |
7199768 |
aagaacaaagtgatatcaaactctgttggtagacttgtggaaccatccaa |
7199817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 24723536 - 24723488
Alignment:
| Q |
127 |
aattttaagagtcttaaaagtaccatccgtagaattgtaaacaaccaac |
175 |
Q |
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| T |
24723536 |
aattttaagactcttaaaagttccatctctagaattgtaaacaaccaac |
24723488 |
T |
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