View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3210-Insertion-2 (Length: 680)

Name: NF3210-Insertion-2
Description: NF3210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3210-Insertion-2
NF3210-Insertion-2
[»] chr4 (1 HSPs)
chr4 (7-680)||(28228034-28228704)


Alignment Details
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 7 - 680
Target Start/End: Original strand, 28228034 - 28228704
Alignment:
Q  7 aagcaccagaatttcaactcagggatgggtcacaaaaatagtggagacactgaaaagttacagatatcaagtacataatcaaaatcacggatagaaaagg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28228034 aagcaccagaatttcaactcagggatgggtcacaaaaatagtggagacactgaaaagttacagatatcaagtacataatcaaaatcacggatagaaaagg 28228133  T
Q  107 atgtgggggcaaatagaatatagcaatcaagcataactgctagatgctttccctaaatcaggttggcaaaattaggttatctattttatagacgccacat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28228134 atgtgggggcaaatagaatatagcaatcaagcataactgctagatgctttccctaaatcaggttggcaaaattaggttatctattttatagacgccacat 28228233  T
Q  207 ctaagatggactcttgtgatgtaggagtacgaatcctctcaccagttccaataggtttctttgtgtggctggatcttgcccaataattacactttgaatg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28228234 ctaagatggactcttgtgatgtaggagtacgaatcctctcaccagttccaataggtttctttgtgtggctggatcttgcccaataattacactttgaatg 28228333  T
Q  307 ttcttttccttagcctaagataatgctcggcagaatatcctcagccagtgctattatcccactgtacaggatcaaaaatatggtcaatctttctggaaag 406  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28228334 ctcttttccttagcctgagataatgctcggcagaatatcctcagccagtgctattatcccactgtacaggatcaaaaatatggtcaatctttctggaaag 28228433  T
Q  407 cagttatgtatcacactgacattcctccgcaaacatgcttcacgaatcgagaaaaactccatcctacaagttcaacaaaatacaaaatcaagttcaataa 506  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||||||||    
T  28228434 cagttatgtatcacactgacattcctccgcaaacatgcttcatgaatcgagaaaaactccatcctacaagttcaacaaaa-agacaatcaagttcaataa 28228532  T
Q  507 taagtcaagaattgataacctgaaggtccatttggtttaagaaaatctttgnnnnnnnnnnnnnnnnnaattacaaaaatgtcaatatgctttagttctg 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||    
T  28228533 taagtcaagaattgataacctgaaggtccatttggtttaagaaaatctttgtttttatttttacttttaattacaaaaatgtcaatatgctttagttctg 28228632  T
Q  607 ttttgagttttcaaaatatttgtgcaggaaacaacaacaaaaatgctgtctaaacaccaagatctccacatgag 680  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  28228633 ttttgagttttcaaaatatttgtgcaggaaacaaca--gaaaatgctgtctaaacaccaagatctccacatgag 28228704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University