View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3210-Insertion-3 (Length: 676)

Name: NF3210-Insertion-3
Description: NF3210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3210-Insertion-3
NF3210-Insertion-3
[»] chr3 (1 HSPs)
chr3 (8-676)||(46581809-46582478)


Alignment Details
Target: chr3 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 8 - 676
Target Start/End: Complemental strand, 46582478 - 46581809
Alignment:
Q  8 aattctgccatcaatacaagtagaacattttttctctgcccagctttctatatcatattggccatgacccatgattcttcttcctgagcatagccttcca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46582478 aattctgccatcaatacaagtagaacattttttctctgcccagctttctatatcatattggccatgacccatgattcttcttcctgagcatagccttcca 46582379  T
Q  108 atcattactgcaattatacccaacacaattatcactacgagaactccaatgagaggaccaatggagtcatgttgtgatgcaccatggtaggatggttgtg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46582378 atcattactgcaattatacccaacacaattatcactacgagaactccaatgagaggaccaatggagtcatgttgtgatgcaccatggtaggatggttgtg 46582279  T
Q  208 tcactgtaaatggaggaggctgttgttgatacactggcattgacgacgatgaagatgatgac-atta-attgtgtttccttttacagaaactagaacaag 305  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||  || | ||||||||||||||||||||||||||||||||    
T  46582278 tcactgtaaacggaggaggctgttgttgatacactggcattgacgacgatgaagatgaagatgatgacattgtgtttccttttacagaaactagaacaag 46582179  T
Q  306 ttcttagtagttggttgtttggattggtaggttagattgaatgtaaggaagtagttggagaataagcgatgcggagttaaacagaattactactggcacc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  46582178 ttcttagtagttggttgtttggattggtaggttagattgaatgtaaggaagtagttggataataagcaatgcggagttaaacagaattactactggcacc 46582079  T
Q  406 actttaattacttgtaatgaagattgtaggagagtgtagaagaatgcatgttattattatttggatgcttggtgagatgttgttatgagacattctcatt 505  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46582078 actttaattacttgtaatgaagattgtaggagagtgtaaaagaatgcatgttattattatttggatgcttgatgagatgttgttatgagacattctcatt 46581979  T
Q  506 ctgaaattctctttgtaaaggacgacttatattatatagcagatataaagaaatatctgctttgcttatttctttagaaagagaaagggtttaagaattt 605  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46581978 ctgaaattctcgttgtaaaggatgacttatattatatagcagatataaagaaatatctgctttgcttatttctttagaaagagaaagggtttaagaattt 46581879  T
Q  606 tgtattctttgatannnnnnnnnnaatttctcacatatttacttcaccagaatagaatcactgtcatacta 676  Q
    |||||||||||||           ||||||||||||||||||||||| |||||||||||||||||||||||    
T  46581878 tgtattctttgat-ttttttttttaatttctcacatatttacttcactagaatagaatcactgtcatacta 46581809  T

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