View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3210-Insertion-4 (Length: 609)
Name: NF3210-Insertion-4
Description: NF3210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3210-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 40 - 609
Target Start/End: Complemental strand, 4969339 - 4968761
Alignment:
| Q |
40 |
gggaagatctctggtaacttggaattttgtagggtattagtaacttctaggcaaaattagttcaaaatttaaatttattttaagaaagtgacatgatatt |
139 |
Q |
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| T |
4969339 |
gggaagatctctggtaacatggaattttgtagggtattagtgacttctaggcaaaattagttcaaaatttaaatttattttaagaaagtgacacgacatt |
4969240 |
T |
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| Q |
140 |
agataattaaatagttgataagcatccaacgaaactccacgacaccagagtattcaaagaaagaaagnnnnnnnnnnggttgttgttctttaatctcgaa |
239 |
Q |
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| T |
4969239 |
agataattagatagttgataagcatccaacgaaactccatgacaccagagtattcaaagaaagaaagaaaaaa----ggttgttgttctttgatctcgaa |
4969144 |
T |
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| Q |
240 |
aaattggttaattgtgaagtgcaccaaaccaacatcaaaagattatttaatcattacgaatattgaatcttagacaagacaagttat--gataatctgaa |
337 |
Q |
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| T |
4969143 |
aaattggttaattgtgaagtgcaccaaaccaacatcaaaagattatttaatcattgtgaatattgaatcttagacaagacaagttatctgataatctgaa |
4969044 |
T |
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| Q |
338 |
aaaccttatgtgtgtgatggtatgtattgatagttttggaaaatgttttggtttaaagaaatgttcaacgtttcggatgttaaacatgaggaattgaaat |
437 |
Q |
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| T |
4969043 |
aaaccttatgtgtgtgatggtgtgtattgatagttttggaaaatgttttggtttaaagaaatgttcaacgatttggatgttaaatatgaggaattgaaat |
4968944 |
T |
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| Q |
438 |
tacaaaggatt----------gaaagaagttatgtttcaaaacaaagtgaacttggcgcggatgctagggtgggcaagtgaagcaagtctctcacgatgg |
527 |
Q |
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| T |
4968943 |
tacaaagaattgaactgaaccgaaagaagttatgtttcaaaacaaagtgaacttggcgccgatgctagggtgggcaagtgaagcaagtctctcacgatgg |
4968844 |
T |
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| Q |
528 |
acaagttatttgaatcgtcgggtgaatgatgttatgttacaccgtcagaatgatatatatttc-tttctctctctcaatcatc |
609 |
Q |
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| T |
4968843 |
acaagttatttgaatcgtccgataaatgatgttatgttacaccatcagaatgatatatatttcttttctctctctcaatcatc |
4968761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 31578467 - 31578515
Alignment:
| Q |
76 |
ttagtaacttctaggcaaaattagttcaaaatttaaatttattttaaga |
124 |
Q |
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| T |
31578467 |
ttagtaccttctaggcaaaatcaatttaaaatttaaatttattttaaga |
31578515 |
T |
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