View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3210-Insertion-5 (Length: 600)
Name: NF3210-Insertion-5
Description: NF3210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3210-Insertion-5 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 8 - 600
Target Start/End: Complemental strand, 7237941 - 7237353
Alignment:
| Q |
8 |
gtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
7237941 |
gtaaatggaacggaatggaacacaatggaatcaattccattctatatcactcaatccttcaatttctcattcccccaaatttgggaggtatccaatggaa |
7237842 |
T |
|
| Q |
108 |
taaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctattt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7237841 |
taaaacttgtgtctttaaattttactat----tctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctattt |
7237746 |
T |
|
| Q |
208 |
ctactgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttctatatgattatacctgcaagtata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7237745 |
ttactgactgctcatttcactttcatcttctctgtactgttgactgctcttccttcttcttctgtcttctcatttctaaatgattatacctgcaagtata |
7237646 |
T |
|
| Q |
308 |
ctaatcccacgtataaattaatgtgggaagtagaggaaaataaaaattatcatgttcaagtgggataattctcagaacaaatattaaatgggtaattctc |
407 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7237645 |
ttaaacccacgtataaattaatgtgggaagtagaggaaaataaaaattatcatgttcaagtgggataattctcagaacaaatattaaatgggtaattctc |
7237546 |
T |
|
| Q |
408 |
agagtttgaggactgagtacctcctaaagaatataggatgaaggaatagaattgatattttattcatgatactttcaaatgaatacatctgcttatatag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7237545 |
agagtttgaggactgagtacctcctaaagaatataggatgaaggaatataattgatattttattcatgatactttcaaatgaatacatctgcttatatat |
7237446 |
T |
|
| Q |
508 |
taatggaaataaaagaaatgttgcttaactaatttggccgcatcataaggatttattctatgctggcacaactgcataacaaactaaatctag |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7237445 |
taatggaaataaaagaaatgttgcttaactaaattggccgcatcataaggatttattctatgctggcaactctgcataacaaactaaatctag |
7237353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 23113870 - 23113951
Alignment:
| Q |
8 |
gtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaattt |
89 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||| | ||| ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
23113870 |
gtaaatggaatggaatggaacacaatggaaccaattccattcaataccactcaatctttcaatttctcatttcccccaattt |
23113951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 29428946 - 29429043
Alignment:
| Q |
11 |
aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat |
108 |
Q |
| |
|
||||||| |||||| |||| |||||||| ||||||||| ||| ||||| || | |||||| |||||||| |||||||||| |||||||||||||| |
|
|
| T |
29428946 |
aatggaatggaatgaaacatgatggaatccattccatcccatagcactctctcttccaatttatcattccctccaatttggggtgtatgcaatggaat |
29429043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 23113974 - 23114009
Alignment:
| Q |
137 |
tattctaccctcattttatttgcctcttcctctact |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
23113974 |
tattctaccctcattttatttgcctcttcctctact |
23114009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 21527 - 21261
Alignment:
| Q |
12 |
atggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaa |
111 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
21527 |
atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaa |
21428 |
T |
|
| Q |
112 |
acttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctac |
211 |
Q |
| |
|
| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21427 |
atttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctac |
21332 |
T |
|
| Q |
212 |
tgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta |
285 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
21331 |
tgactg--catttcactttcatcttctttgtactgctgactgctctt-cttcttctcctgtcttctcatttcta |
21261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 22536075 - 22535809
Alignment:
| Q |
12 |
atggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaa |
111 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
22536075 |
atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaa |
22535976 |
T |
|
| Q |
112 |
acttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctac |
211 |
Q |
| |
|
| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22535975 |
atttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctac |
22535880 |
T |
|
| Q |
212 |
tgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta |
285 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
22535879 |
tgactg--catttcactttcatcttctttgtactgctgactgctctt-cttcttctcctgtcttctcatttcta |
22535809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 22531390 - 22531124
Alignment:
| Q |
12 |
atggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaa |
111 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
22531390 |
atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaa |
22531291 |
T |
|
| Q |
112 |
acttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctac |
211 |
Q |
| |
|
| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
22531290 |
atttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttaaacacgttcttttctctatttctac |
22531195 |
T |
|
| Q |
212 |
tgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta |
285 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| |||||||| || |||||||| |||||||||||||||| |
|
|
| T |
22531194 |
tgactg--catttcactttcatcttctttgtactgctgactgct-tttcttcttctcctgtcttctcatttcta |
22531124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 25993996 - 25993733
Alignment:
| Q |
12 |
atggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaa |
111 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
25993996 |
atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaa |
25993897 |
T |
|
| Q |
112 |
acttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctac |
211 |
Q |
| |
|
| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25993896 |
atttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctac |
25993801 |
T |
|
| Q |
212 |
tgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta |
285 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
25993800 |
tgactg--catttcactttcatcttctttgtactgctgactgct----cttcttctcctgtcttctcatttcta |
25993733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 36549436 - 36549387
Alignment:
| Q |
61 |
atccttcaatttctcattccccccaatttgggaggtatgcaatggaataa |
110 |
Q |
| |
|
||||||||||||||| |||||||||||| || |||||||||||||||| |
|
|
| T |
36549436 |
atccttcaatttctctttccccccaattcagggtgtatgcaatggaataa |
36549387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 13191821 - 13191555
Alignment:
| Q |
12 |
atggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaa |
111 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
13191821 |
atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaa |
13191722 |
T |
|
| Q |
112 |
acttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctac |
211 |
Q |
| |
|
| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13191721 |
atttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctac |
13191626 |
T |
|
| Q |
212 |
tgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta |
285 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
13191625 |
tgactg--catttcactttcatcttctttgtactgctgactgctctt-cttcttctcctgtcttctcatttcta |
13191555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 108
Target Start/End: Complemental strand, 16597707 - 16597673
Alignment:
| Q |
74 |
tcattccccccaatttgggaggtatgcaatggaat |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
16597707 |
tcattccccccaatttaggaggtatgcaatggaat |
16597673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 4943585 - 4943645
Alignment:
| Q |
32 |
atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg |
92 |
Q |
| |
|
|||||| | ||||||||| ||| |||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
4943585 |
atggaacccattccatccaataccactcattccttcaattttccattccacccaatttggg |
4943645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 6e-88; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 33091175 - 33091440
Alignment:
| Q |
13 |
tggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaa |
112 |
Q |
| |
|
||||| ||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
33091175 |
tggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaa |
33091274 |
T |
|
| Q |
113 |
cttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctact |
212 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33091275 |
tttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctact |
33091370 |
T |
|
| Q |
213 |
gactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta |
285 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
33091371 |
gactg--catttcactttcatcttctttgtactgctgactgctctt-cttcttctcctgtcttctcatttcta |
33091440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 19694652 - 19694555
Alignment:
| Q |
11 |
aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat |
108 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||| || || |||||||| |||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
19694652 |
aatggaagggaatggaacataatggaatccattccatccaattccatcaaatccttccatttttcattccccccaatttggggtgcatgcaatggaat |
19694555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 10871258 - 10871358
Alignment:
| Q |
8 |
gtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaa |
107 |
Q |
| |
|
|||| ||||| | ||||||||| ||||||| | ||| ||||| ||| |||||| || | ||| || ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
10871258 |
gtaattggaatgaaatggaacataatggaacccatttcatccaataccactcactcttccaaattttcattcccctcaatttgggatgtatgcaatggaa |
10871357 |
T |
|
| Q |
108 |
t |
108 |
Q |
| |
|
| |
|
|
| T |
10871358 |
t |
10871358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 4e-86; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 49368469 - 49368203
Alignment:
| Q |
12 |
atggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaa |
111 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || |
|
|
| T |
49368469 |
atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattctccccaatttgggaggtatccaatggaatgaa |
49368370 |
T |
|
| Q |
112 |
acttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctac |
211 |
Q |
| |
|
| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49368369 |
atttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctac |
49368274 |
T |
|
| Q |
212 |
tgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta |
285 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
49368273 |
tgactg--catttcactttcatcttctttgtactgctgactgctctt-cttcttctcctgtcttctcatttcta |
49368203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 20983273 - 20983532
Alignment:
| Q |
19 |
ggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtg |
118 |
Q |
| |
|
||||||||| ||||| || ||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||| ||||| |
|
|
| T |
20983273 |
ggaatggaatgcaatgaaaccaattccattctataccactcaatccttcaatttcttattccccccaatttgggaggtatccaatgaaatgaaatttgtg |
20983372 |
T |
|
| Q |
119 |
tctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgc |
218 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20983373 |
tcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctactgactg- |
20983467 |
T |
|
| Q |
219 |
tcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta |
285 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
20983468 |
-catttcactttcatcttctttgtactgctgactgctctt-cttcttctcctgtcttctcatttcta |
20983532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 14567889 - 14567979
Alignment:
| Q |
19 |
ggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaata |
109 |
Q |
| |
|
||||||||| ||||||||| ||||||||| ||| || ||| |||||||||| ||||||||||||||||||| |||| |||||||||| |
|
|
| T |
14567889 |
ggaatggaatacaatggaactcattccatccaataccatccaaaccttcaatttttcattccccccaatttggggtgtatccaatggaata |
14567979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 17575791 - 17575853
Alignment:
| Q |
21 |
aatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccc |
83 |
Q |
| |
|
||||||||| |||||||| |||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
17575791 |
aatggaacataatggaattcattccatctcatatcactcaatccttcaatttttcattccccc |
17575853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 35231849 - 35231809
Alignment:
| Q |
69 |
atttctcattccccccaatttgggaggtatgcaatggaata |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35231849 |
atttttcattccccccaatttgggaggtatgcaatggaata |
35231809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 42029356 - 42029280
Alignment:
| Q |
32 |
atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat |
108 |
Q |
| |
|
|||||| | ||||||||| ||| |||||| ||||||||||| ||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
42029356 |
atggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaat |
42029280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 40024898 - 40024845
Alignment:
| Q |
55 |
cactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat |
108 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
40024898 |
cactcattccttcaatttttcattcctcccaatttggggtgtatccaatggaat |
40024845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 4e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 20717690 - 20717424
Alignment:
| Q |
12 |
atggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaa |
111 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
20717690 |
atggaatggaatggaatgcaatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaa |
20717591 |
T |
|
| Q |
112 |
acttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctac |
211 |
Q |
| |
|
| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20717590 |
atttgtgtcttgaaattttac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctac |
20717495 |
T |
|
| Q |
212 |
tgactgctcatttcactttcatcttctatgtactgttgactgctcttccttcttcttatgtcttctcatttcta |
285 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
20717494 |
tgactg--catttcactttcatcttctttgtactactgactgctctt-cttcttctcctgtcttctcatttcta |
20717424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 28219076 - 28219152
Alignment:
| Q |
32 |
atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat |
108 |
Q |
| |
|
|||||| | ||||||||| ||| |||||| ||||||||||| ||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
28219076 |
atggaacccattccatccaataccactcattccttcaatttttcattccacccaatttggggtgtatccaatggaat |
28219152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 31 - 252
Target Start/End: Complemental strand, 30190889 - 30190674
Alignment:
| Q |
31 |
aatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaataaaacttgtgtctttaaatttt |
130 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| ||||||| |
|
|
| T |
30190889 |
aatggaaccaattccattctataccactcaatccttcaatttctcattccccccaatttgggaggtatccaatggaatgaaatttgtgtcttgaaatttt |
30190790 |
T |
|
| Q |
131 |
actatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctctatttctactgactgctcatttcacttt |
230 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30190789 |
ac----tattctaccctccttttatttgcctcttcctctactcaatcacaattttcaacacgttcttttctctatttctactgactg--catttcacttt |
30190696 |
T |
|
| Q |
231 |
catcttctatgtactgttgact |
252 |
Q |
| |
|
|||||||| ||||||| ||||| |
|
|
| T |
30190695 |
catcttctttgtactgctgact |
30190674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 31991735 - 31991514
Alignment:
| Q |
8 |
gtaaatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaa |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
31991735 |
gtaaatggaatggaatggaacacaatggaatcaattccattctataccactcattccttcaattcctcattccccccaatttggg-ggtatccaatggaa |
31991637 |
T |
|
| Q |
108 |
taaaacttgtgtctttaaattttactatatattctaccctcattttatttgcctcttcctctacttgatcataattttcaacacgttcttttctcta--- |
204 |
Q |
| |
|
| |||||||||||| |||| |||| |||||||||||||||||||||| ||||||||||||| | ||||||| | |||||| |||||||| | |
|
|
| T |
31991636 |
tggaacttgtgtcttgaaatattac----tattctaccctcattttatttgtctcttcctctactcaaatataatttcccacacgtccttttctccatta |
31991541 |
T |
|
| Q |
205 |
-tttctactgactgctcatttcacttt |
230 |
Q |
| |
|
|| ||||||||||||||| ||||||| |
|
|
| T |
31991540 |
cttcctactgactgctcatctcacttt |
31991514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 19337655 - 19337736
Alignment:
| Q |
11 |
aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg |
92 |
Q |
| |
|
||||||| | |||||||||||||||||||||| |||| |||| |||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
19337655 |
aatggaatgaaatggaacacaatggaatcaatgccattatataccactcaatccttcaatttttcaatccccctaatttggg |
19337736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 35306793 - 35306754
Alignment:
| Q |
69 |
atttctcattccccccaatttgggaggtatgcaatggaat |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35306793 |
atttttcattccccccaatttgggaggtatgcaatggaat |
35306754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 717 - 798
Alignment:
| Q |
11 |
aatggaacggaatggaacacaatggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttggg |
92 |
Q |
| |
|
||||||| | |||||||||||||||||||||| |||| |||| |||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
717 |
aatggaatgaaatggaacacaatggaatcaatgccattatataccactcaatccttcaatttttcaatccccctaatttggg |
798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 56974 - 57050
Alignment:
| Q |
32 |
atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat |
108 |
Q |
| |
|
|||||| ||||||||||| ||| |||||| | ||| ||| ||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
56974 |
atggaaccaattccatccaataccactcatttagtcattttttcattccccccaaattgggaggtatccaatggaat |
57050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 48084775 - 48084816
Alignment:
| Q |
67 |
caatttctcattccccccaatttgggaggtatgcaatggaat |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | ||||||| |
|
|
| T |
48084775 |
caatttttcattccccccaatttgggaggtatacgatggaat |
48084816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 41809963 - 41809887
Alignment:
| Q |
32 |
atggaatcaattccatcctatatcactcaatccttcaatttctcattccccccaatttgggaggtatgcaatggaat |
108 |
Q |
| |
|
|||||| | ||||||| |||| |||||| || | |||||| ||||||||||||||||||| |||| ||||||||| |
|
|
| T |
41809963 |
atggaacccattccatgatataccactcattcatccaattttccattccccccaatttgggatgtattcaatggaat |
41809887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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