View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3210-Insertion-6 (Length: 503)
Name: NF3210-Insertion-6
Description: NF3210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3210-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Original strand, 26460344 - 26460862
Alignment:
| Q |
8 |
gcatgtatcaggagttcaacctggaggagcatccgacacaagaggcaatgaataacgttctgagacacggtagtaca--tttcacaaggtatacaaccac |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
26460344 |
gcatgtatcaggagttcaacctggaggagcatccgacacaagaggcaatgaataacgttccgagacacggtagtacacatttcacaaggtatacaaccac |
26460443 |
T |
|
| Q |
106 |
tcaaccggaaaactctgagatgctttgtaaagacgggcgccatgattttggtctcggtacagcaggatttactgatactacccttagcctctgtctgtct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26460444 |
tcaaccggaaaactctgagatgctttgtaaagacgggcgccatgattttggtctcggtacagcaggatttactgatactacccttagcctctgtctgtct |
26460543 |
T |
|
| Q |
206 |
gctctcattgcctgcagttatagcatcggttctcattaacaannnnnnnacatagttatcaaatcctggtctgataatagtttatgttgatatcattatt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26460544 |
gctctcattgcctgcagttatagcatcggttctcattaacaatttttttacatagttatcaaatcctggtctgataatagtttatgttgatatcattatt |
26460643 |
T |
|
| Q |
306 |
catgaaatagtactttaccaaaacgaaaaact----------------------aaagaaacaaacctgatacatccttcccgtgtccaacatcccttca |
383 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26460644 |
catgaaatagtactttaccaaaacgaaaaactaaaaatgacagatgaagatctaaaagaaacaaacctgatacatccttcctgtgtccaacatcccttca |
26460743 |
T |
|
| Q |
384 |
ctctcacaggctgaattttccttttccaggtgcatcatttctacatcctccactgtctttccccgtgccttcctcttctttgctttcattaccttctcaa |
483 |
Q |
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| T |
26460744 |
ctctcacaggctgaattttccttttccaggtgcatcatttctacatcctccactgtctttccccgtgccttcctcttctttgctttcattaccttctcaa |
26460843 |
T |
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| Q |
484 |
cctcttccaaccaaaacac |
502 |
Q |
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||||||||||||||||||| |
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| T |
26460844 |
cctcttccaaccaaaacac |
26460862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 81 - 219
Target Start/End: Original strand, 26447780 - 26447918
Alignment:
| Q |
81 |
tacatttcacaaggtatacaaccactcaaccggaaaactctgagatgctttgtaaagacgggcgccatgattttggtctcggtacagcaggatttactga |
180 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
26447780 |
tacatttcacaagttataccaccactcaaccggaaaactctgagatgctttgtaaagacgggcgccatgattttggtcttggtggagcaggatttactga |
26447879 |
T |
|
| Q |
181 |
tactacccttagcctctgtctgtctgctctcattgcctg |
219 |
Q |
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| T |
26447880 |
tactacccttggcctctgtttgtctgttctcattgcctg |
26447918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 255 - 335
Target Start/End: Original strand, 26447984 - 26448064
Alignment:
| Q |
255 |
acatagttatcaaatcctggtctgataatagtttatgttgatatcattattcatgaaatagtactttaccaaaacgaaaaa |
335 |
Q |
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| T |
26447984 |
acatagttatcaaatcatggtctgctaatagtttatatttatatcattattcatggaataatacttcaccaagacgaaaaa |
26448064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 336
Target Start/End: Original strand, 5326126 - 5326205
Alignment:
| Q |
257 |
atagttatcaaatcctggtctgataatagtttatgttgatatcattattcatgaaatagtactttaccaaaacgaaaaac |
336 |
Q |
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||||||| |||||| |||| |||| ||||||||||| | |||||||||| |||||||||||| |||||||| |||||| |
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| T |
5326126 |
atagttaacaaatcatggtgtgattctagtttatgtttctctcattattcaagaaatagtacttaaccaaaacaaaaaac |
5326205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 15405798 - 15405851
Alignment:
| Q |
117 |
actctgagatgctttgtaaagacgggcgccatgattttggtctcggtacagcag |
170 |
Q |
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||||||| |||||||||||||| |||||||| ||||||| ||| ||||||||| |
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| T |
15405798 |
actctgaaatgctttgtaaagaggggcgccaggattttgacctctgtacagcag |
15405851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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