View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3210-Insertion-8 (Length: 470)
Name: NF3210-Insertion-8
Description: NF3210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3210-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 7 - 470
Target Start/End: Complemental strand, 39308322 - 39307858
Alignment:
| Q |
7 |
ataaacatcccgtctccccaacctattcacacgccttttaacgacaaagccac-gaggacacactcaagatccaaagcgaacaatacctcagnnnnnnnn |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39308322 |
ataaacatcccgtctccccaacctattcacacgccttttaacgacaaagtcacagaggacacactcaagatccaaagcgaacaatacctcagaaaaaaaa |
39308223 |
T |
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| Q |
106 |
ntgcagcggacatgacttctaaacgaaaacatcaacaaggtcattttgattgaaaaaagaaaatactaagctcttgaccaatgcttccttcaggatcaat |
205 |
Q |
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| T |
39308222 |
atgcagcggacatgacttctaaacgaaaacatcaacaaggtcattttgattgaaaaaagaaaatactaagctcttgaccaatgcttccttcaggatcaat |
39308123 |
T |
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| Q |
206 |
caaatgaaaagattcacaattagatttagaagaaccacgaaccctttgaaagttagctctaagatacataagttgatcatcttcttgacaaatctctttt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39308122 |
caaatgaaaagattcacaattagatttagaagaaccacgaaccctttgaaagttagctctaagatacataagttgatcatcttcttgacaaatctctttt |
39308023 |
T |
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| Q |
306 |
ccatttataacaccagtaccaacagaaaccgaccgcatcaagttaagtgcttctaaatcgcttcttgaaggcttacgcttaaccgaatacccgactttcc |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39308022 |
ccatttataacaccagtaccaacagaaaccgaccgcatcaagttaagtgcttctaaatcacttcttgaaggcttacgcttaaccgaatacccgactttcc |
39307923 |
T |
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| Q |
406 |
tcccattacagtacataatccatagaggagttgagaacaagttactgttattgttacaagatcct |
470 |
Q |
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| T |
39307922 |
tcccattacagtacataatccaaagaggagttgaaaacaagttactgttattgttacaagatcct |
39307858 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 223
Target Start/End: Complemental strand, 37495167 - 37495139
Alignment:
| Q |
195 |
tcaggatcaatcaaatgaaaagattcaca |
223 |
Q |
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| T |
37495167 |
tcaggatcaatcaaatgaaaagattcaca |
37495139 |
T |
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