View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3210-Insertion-9 (Length: 461)
Name: NF3210-Insertion-9
Description: NF3210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3210-Insertion-9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Complemental strand, 12126670 - 12126219
Alignment:
| Q |
8 |
cagtcgacattagtaatgatttgtatgtcatattcaataatcttagaatgtgattctttcataagagaaagttgtcacaaaagtaattaagatttcaagt |
107 |
Q |
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| T |
12126670 |
cagtcgacattagtaatgttttgtatgtcatattcaataatcttagtatgtgactcttt-ataagagaaagttgtcataaaagtaattaagatttcaagt |
12126572 |
T |
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| Q |
108 |
gtatgtttgaattaagattttaaagggaaaaattacttgtttctcttttaaaaagtaatgaagttataaaatgtttctaaaaataatttaaaggtggttg |
207 |
Q |
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| T |
12126571 |
gtatgtttgaattaagattttaaagggaaaaattacttgtttctcttttaaaaagtaatgaagttataaaatgtttctaaaaataatttaaaggtggttg |
12126472 |
T |
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| Q |
208 |
aaatattattatgattattgtgttgttctttcaaactannnnnnnnattaaaaaagcatagatatatagcaaatatagtcttagtttttcgacactctta |
307 |
Q |
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| T |
12126471 |
aaatattattatgattattgtgttgttctttcaaacta-tttttttattaaaaaaacatagatatatagcaaatatagtcttagtttttcgacactctta |
12126373 |
T |
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| Q |
308 |
tggacggtgtgattgcatcccgtaagcatagatatgttggtagctataatgcattgttatatgtatggttggattttgaacttcaaatacctcatttatt |
407 |
Q |
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| T |
12126372 |
tggacggtgtgattacatcccgtaagcatagatatgttggtagctataatgcattgttatatgtacggttgcgttttgaacttcaaatacctcatttatt |
12126273 |
T |
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| Q |
408 |
caccttaaaattgaattctaaccactaaactacttacaaaaatataatcctaag |
461 |
Q |
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| T |
12126272 |
catcttaaaattgaattctaaccactaaactacttacaaaaatataatcctaag |
12126219 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 443
Target Start/End: Original strand, 685579 - 685667
Alignment:
| Q |
355 |
aatgcattgttatatgtatggttggattttgaacttcaaatacctcatttattcaccttaaaattgaattctaaccactaaactactta |
443 |
Q |
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| T |
685579 |
aatgcattattatatgtagggttggggtttgaaccgcaaacatccaatttatttactttaaaagtgaattctaactactaaactactta |
685667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 26924047 - 26924003
Alignment:
| Q |
365 |
tatatgtatggttggattttgaacttcaaatacctcatttattca |
409 |
Q |
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| T |
26924047 |
tatatgtatggttggagtttgaactgcaaacacctcatttattca |
26924003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 442
Target Start/End: Original strand, 34797161 - 34797251
Alignment:
| Q |
353 |
ataatgcattgttatatgta-tggttggattttgaacttcaaatacctcatttattcaccttaaaattgaattctaaccactaaactactt |
442 |
Q |
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| T |
34797161 |
ataatgcattattatatatagtggttggggtttgaattccaaacacctcacttattcaccttaaagatgaattctagccaccagactactt |
34797251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 3481199 - 3481148
Alignment:
| Q |
394 |
atacctcatttattcaccttaaaattg---aattctaaccactaaactactt |
442 |
Q |
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| T |
3481199 |
atacctcacttattcaccttaaaaatggtgaattctaaccactaaactactt |
3481148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 12311427 - 12311382
Alignment:
| Q |
398 |
ctcatttattcaccttaaaat-tgaattctaaccactaaactactt |
442 |
Q |
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| T |
12311427 |
ctcacttattcaccttaaaatgtgaattctagccactaaactactt |
12311382 |
T |
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