View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3210R-Insertion-1 (Length: 888)
Name: NF3210R-Insertion-1
Description: NF3210R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3210R-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 819; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 9 - 888
Target Start/End: Original strand, 1250658 - 1251538
Alignment:
| Q |
9 |
aatttgaataacaatattacacttttaagtaaaaacaagtaacatagcacaatcataagctgatatatcatctactagcctaaaaataattcaggattca |
108 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1250658 |
aattcgaataaaaatattacacttttaagtaaaaacaagtaacatagcacaatcataagctgatatatcatctactagcctaaaaataattcaggattca |
1250757 |
T |
|
| Q |
109 |
agttgtaaatcaaatgtcaattgaaaagtggctgactatgcaaagttgtcataaagagtggttggctacactaagtttaggtagtgattttattag--tg |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
1250758 |
agttgtaaatcaaatgtcaattgaaaagtggctgactatgcaaagttgtcaaaaaaagtggttggctacactaagtttaggtagtgattttattagagtg |
1250857 |
T |
|
| Q |
207 |
tatcagggttcataatagtgaattgatatacatcataatgaattggaattgagattccatcatgacgaatcagatttaagatgaaaagcatattcatatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1250858 |
tatcagggttcataatagtgaattgagatacatcataatgaattggaattgagattccatcatgacgaatcagatttaagatgaaaagcatattcatatt |
1250957 |
T |
|
| Q |
307 |
agatagacactagaatttcatatcgattgagtcagttttatatcgaatcgagatacaactcgcaggaatgtgagatactgataaccaatatattgcttaa |
406 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1250958 |
agatatacactagaatttcgtatcgattgagtcagttttatatcgaatcgagatacaactcgcaggaatgtgagatactgataaccaatatattgcttaa |
1251057 |
T |
|
| Q |
407 |
tatgaatctggctgatgagttaagatactgtcgacaaatgtccctggagcatattctcacttgtattcattgtttacttctttgattatttccatcaggg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1251058 |
tatgaatctggctgatgagttaagatactgtcgacaaatgtccctggagcatattctcacttgtattcattgtttacttatttgattatttccatcaggg |
1251157 |
T |
|
| Q |
507 |
gtcagatgggattatcagaagatgaacaaatacaaaagcaagaacaaaggcttctgctgagttgcataggagatttagaagaaaaccctgtactgaatgg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1251158 |
gtcagatgggattatcagaagatgaacaaatacaaaagcaagaacaaaggcttctgctgagttgcataggagatttagaagaaaaccctgtactgaatgg |
1251257 |
T |
|
| Q |
607 |
atctctagacaatttcacgagctgctgccaaccaaatggagtcagctgctgccaagaaaacggaaactcttccattttgtcagagtcaggtgtcagtgga |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
1251258 |
atctctagacaatttcacgagctgctgccaaccaaatggagtcagctgctgccaagaaaacggaaactattcc-ttttgtcagagtcaggtgtcagtgga |
1251356 |
T |
|
| Q |
707 |
tgagagaatgagctccgatgtcatcgagactgaagcaaagctttcagctgataataataagagcagcaaggcggcggtttctcgaatcaacagcgggaaa |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
1251357 |
tgagagaatgagctccgatgtcatcgagactgaagcaaagctttcagctgataataataagagcagcaaggcgtcggtttctcgaatcaacagcgggaaa |
1251456 |
T |
|
| Q |
807 |
ggagcttcatgcaggtctcgttctatgacatcatggcttgacggctgggatcaagaagatacttatgctgctcttgctgttg |
888 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1251457 |
ggagcttcatgcaggtctcgttctatgacatcatggcttgacggctgggaacaagaagatacttatgctgctcttgctgttg |
1251538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 52750254 - 52750150
Alignment:
| Q |
95 |
taattcaggattcaagttgtaaatcaaatgtcaattgaaaagtggctgactatgcaaagttgtca--taaagagtggttggctacactaagtttaggtag |
192 |
Q |
| |
|
||||||| |||||||||| | |||||||| ||| ||||||||| || ||| |||| ||| || |||| ||||||||||||||||||||||| |||| |
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| T |
52750254 |
taattcaagattcaagttaaatatcaaatgacaaaagaaaagtggttggttatacaaaattgacaagtaaaaagtggttggctacactaagtttatgtag |
52750155 |
T |
|
| Q |
193 |
tgatt |
197 |
Q |
| |
|
||||| |
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|
| T |
52750154 |
tgatt |
52750150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 811; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 811; E-Value: 0
Query Start/End: Original strand, 9 - 888
Target Start/End: Original strand, 42017438 - 42018318
Alignment:
| Q |
9 |
aatttgaataacaatattacacttttaagtaaaaacaagtaacatagcacaatcataagctgatatatcatctactagcctaaaaataattcaggattca |
108 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42017438 |
aattcgaataaaaatattacacttttaagtaaaatcaagtaacatagcacaatcataagctgatatatcatctactagcctaaaaataattcaggattca |
42017537 |
T |
|
| Q |
109 |
agttgtaaatcaaatgtcaattgaaaagtggctgactatgcaaagttgtcataaagagtggttggctacactaagtttaggtagtgattttattag--tg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
42017538 |
agttgtaaatcaaatgtcaattgaaaagtggctgactatgcaaagttgtcaaaaaaagtggttggctacactaagtttaggtagtgattttattagagtg |
42017637 |
T |
|
| Q |
207 |
tatcagggttcataatagtgaattgatatacatcataatgaattggaattgagattccatcatgacgaatcagatttaagatgaaaagcatattcatatt |
306 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42017638 |
tatcagggttcatcatagtgaattgagatacatcataatgaattggaattgagattccatcatgacgaatcagatttaagatgaaaagcatattcatatt |
42017737 |
T |
|
| Q |
307 |
agatagacactagaatttcatatcgattgagtcagttttatatcgaatcgagatacaactcgcaggaatgtgagatactgataaccaatatattgcttaa |
406 |
Q |
| |
|
||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42017738 |
agatatacactagaatttcgtatcggttgagtcagttttatatcgaatcgagatacaactcgcaggaatgtgagatactgataaccaatatattgcttaa |
42017837 |
T |
|
| Q |
407 |
tatgaatctggctgatgagttaagatactgtcgacaaatgtccctggagcatattctcacttgtattcattgtttacttctttgattatttccatcaggg |
506 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42017838 |
tatgaatcttgctgatgagttaagatactgtcgacaaatgtccctggagcatattctcacttgtattcattgtttacttctttgattatttccatcaggg |
42017937 |
T |
|
| Q |
507 |
gtcagatgggattatcagaagatgaacaaatacaaaagcaagaacaaaggcttctgctgagttgcataggagatttagaagaaaaccctgtactgaatgg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42017938 |
gtcagatgggattatcagaagatgaacaaatacaaaagcaagaacaaaggcttctgctgagttgcataggagatttagaagaaaaccctgtactgaatgg |
42018037 |
T |
|
| Q |
607 |
atctctagacaatttcacgagctgctgccaaccaaatggagtcagctgctgccaagaaaacggaaactcttccattttgtcagagtcaggtgtcagtgga |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
42018038 |
atctctagacaatttcacgagctgctgccaaccaaatggagtgagctgctgccaagaaaacggaaactcttcc-ttttgtcagagtcaggtgtcagtgga |
42018136 |
T |
|
| Q |
707 |
tgagagaatgagctccgatgtcatcgagactgaagcaaagctttcagctgataataataagagcagcaaggcggcggtttctcgaatcaacagcgggaaa |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42018137 |
tgagagaatgagctccgatgtcatcgagactgaagcaaagctttcagctgataataataagagcagcaaggcggcggtttctcgaatcaacagcgggaaa |
42018236 |
T |
|
| Q |
807 |
ggagcttcatgcaggtctcgttctatgacatcatggcttgacggctgggatcaagaagatacttatgctgctcttgctgttg |
888 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
42018237 |
ggagcttcatgcaggtctcgttctatgacatcatggcttgacggctgggaacaagaagatacttatgctgctcttgctgttg |
42018318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 39646550 - 39646427
Alignment:
| Q |
31 |
ttttaagtaaaaacaagtaacatagcacaatcataagctgatatatcatctactagcctaaaaataattcaggattcaagttgtaaatcaaatgtcaatt |
130 |
Q |
| |
|
||||||||||||||||| ||||||||| | |||| || || |||||||||||| || ||||| ||||| |||| |||| ||||||||||| || |
|
|
| T |
39646550 |
ttttaagtaaaaacaagcaacatagcaaacctataaactaatgtatcatctactaatctcaaaatgattcaagattgaagtcttaaatcaaatgataa-- |
39646453 |
T |
|
| Q |
131 |
gaaaagtggctgactatgcaaagttg |
156 |
Q |
| |
|
||||||||||| |||| |||||||| |
|
|
| T |
39646452 |
aaaaagtggctggctatacaaagttg |
39646427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 5270676 - 5270583
Alignment:
| Q |
31 |
ttttaagtaaaaacaagtaacatagcacaatcataagctgatatatcatctactagcctaaaaataattcaggattcaagttgtaaatcaaatg |
124 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| ||||| || |||||||| || | | | | ||||||||| | ||||||| ||||||||||| |
|
|
| T |
5270676 |
ttttaagtaaaaacaagtgacatagcagaattataagttggtatatcatatatgaacttcagaataattcaaggttcaagtcataaatcaaatg |
5270583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 5912705 - 5912567
Alignment:
| Q |
91 |
aaaataattcaggattcaagttgtaaatcaaatgtcaattgaaaagtggctgactatgcaaagttgtcataaagagtggttggctacactaagtttaggt |
190 |
Q |
| |
|
||||||||||| ||||||| || || |||||||| ||| |||||| || || ||| |||||||| || ||| ||||| || ||||||||||||||||| |
|
|
| T |
5912705 |
aaaataattcaagattcaaattatatatcaaatgacaaaagaaaaggggttggttatacaaagttgaca-aaatagtggctgactacactaagtttaggt |
5912607 |
T |
|
| Q |
191 |
agtgattttatt-agtgtatcagggttcataatagtgaat |
229 |
Q |
| |
|
||||||| ||| | || |||||| ||||| ||||||||| |
|
|
| T |
5912606 |
agtgattcgattgaatgaatcaggattcatcatagtgaat |
5912567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 3469288 - 3469228
Alignment:
| Q |
63 |
ataagctgatatatcatctactagcctaaaaataattcaggattcaagttgtaaatcaaatg |
124 |
Q |
| |
|
||||||| ||||||||||||||| |||| || ||||||| ||||||||| ||||||||||| |
|
|
| T |
3469288 |
ataagctaatatatcatctactaacctagaa-taattcaagattcaagtaataaatcaaatg |
3469228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 2578056 - 2577995
Alignment:
| Q |
63 |
ataagctgatatatcatctactagcctaaaaataattcaggattcaagttgtaaatcaaatg |
124 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||||| | |||| |||| ||||||||||| |
|
|
| T |
2578056 |
ataagctaatatatcatctactagtctcaaaataattgaagattaaagtcataaatcaaatg |
2577995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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