View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3210R-Insertion-3 (Length: 874)

Name: NF3210R-Insertion-3
Description: NF3210R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3210R-Insertion-3
NF3210R-Insertion-3
[»] chr3 (2 HSPs)
chr3 (9-870)||(29208198-29209059)
chr3 (37-129)||(55469937-55470029)
[»] chr4 (3 HSPs)
chr4 (425-691)||(38377513-38377782)
chr4 (236-387)||(38378088-38378240)
chr4 (76-122)||(13298529-13298575)
[»] chr5 (4 HSPs)
chr5 (45-122)||(39647243-39647320)
chr5 (76-125)||(39647139-39647188)
chr5 (77-135)||(8928401-8928459)
chr5 (61-127)||(11257713-11257779)
[»] chr7 (4 HSPs)
chr7 (63-124)||(2219538-2219599)
chr7 (50-135)||(23117361-23117446)
chr7 (61-145)||(24672266-24672350)
chr7 (76-127)||(23218630-23218681)
[»] chr1 (2 HSPs)
chr1 (62-127)||(33651641-33651706)
chr1 (76-127)||(6025980-6026031)
[»] chr6 (2 HSPs)
chr6 (76-127)||(2732936-2732987)
chr6 (61-99)||(17333528-17333566)


Alignment Details
Target: chr3 (Bit Score: 801; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 801; E-Value: 0
Query Start/End: Original strand, 9 - 870
Target Start/End: Original strand, 29208198 - 29209059
Alignment:
Q  9 tctttgtctaacaacattgtaaaatagcgttgttaaatagtggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatg 108  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| | |||| |    
T  29208198 tctttgtccaacaacattgtaaaatagcgttgttaaatagtggtgctataacgctatagtgtaatagaatttgaacaaatcgttattgttccacgatacg 29208297  T
Q  109 ctgtttagtacaaaatgttttgaaatattggatacaatgacgctatatatagcaccgttgcgtagctgagtttgaacaaaaactattttttgcaattaga 208  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  29208298 ctgtttagtacaaaatgttttgaaatagtggatacaatgacgctatatatagcactgttgcgtagctgagtttgaacaaaaactattttttgcaattagc 29208397  T
Q  209 aattatgttagagggtactgnnnnnnntctaggtatctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaa 308  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29208398 aattatgttagagggtactgaaaaaaatctaggtatctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaa 29208497  T
Q  309 acttttggccatggaaaattaaggaaattgcaaaagaaagtgaaacaattaggacatagtattaattaactaagaggaagtagaacaaaactacattata 408  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29208498 acttttggccatggaaaattaaggaaaatgcaaaagaaagtgaaacaattaggacatagtattaattaactaagaggaagtagaacaaaactacattata 29208597  T
Q  409 aaaaattaatcactagtccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaataaatgtgtaactatgtaaccgttgttgaattg 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29208598 aaaaattaatcactagtccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaataaatgtgtaactatgtaaccgttgttgaattg 29208697  T
Q  509 agggggctatataaagagtgagaaaagatgaagtttggaggttggtaactgtctgaaaaatttaatttaatttctgttgctacatcacaaacatgctcta 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29208698 agggggctatataaagagtgagaaaagatgaagtttggaggttggtaactgtctgaaaaatttaatttaatttctgttgctacatcacaaacatgctcta 29208797  T
Q  609 ggatttgcatgctctcttgcaccaaactttctgattaaatttccttctcaatcatatatttgtcaatccttattatgttccttcaaatttccacttagct 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29208798 ggatttgcatgctctcttgcaccaaactttctgattaaatttccttctcaatcatatatttgtcaatccttattatgttccttcaaatttccacttagct 29208897  T
Q  709 taagtgagggataatccatggttcacattaattaatccaatgtttatttgcatgttgtatttgattctttggagaacactgaggtgtatccgtgtatgtt 808  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29208898 taagtgagggataatccatggttcacattaattaatccaatgtttatttgcatgttgtatttgattctttggagaacactgaggtgtatccgtgtatgtt 29208997  T
Q  809 atagttgattggaattcaataattttctatgctctattaagttttgttttagaattaatgtt 870  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29208998 atagttgattggaattcaataattttctatgctctattaagttttgttttagaattaatgtt 29209059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 55470029 - 55469937
Alignment:
Q  37 gttgttaaatagtggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtttt 129  Q
    ||||||||||||||| |||||| |||||||||||| |  ||||| |||||| || ||||||||  || |||||||| ||||||||||| ||||    
T  55470029 gttgttaaatagtggcgctataccgctatagtgtagcggaatttaaacaaaccgctattgttccgtggtatgctgtgtagtacaaaatatttt 55469937  T

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Target: chr4 (Bit Score: 130; Significance: 7e-67; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 425 - 691
Target Start/End: Complemental strand, 38377782 - 38377513
Alignment:
Q  425 tccaaccttcaaagtagatttagtgtttgctctctccatgtttaagtggaataaatgtgtaactatgtaac----cgttgttgaattgagggggctatat 520  Q
    |||||||||||||  ||||| |||||||| |||||||||||||||||||| |  ||||||||||||| | |    |||| |||||   ||||| ||||||    
T  38377782 tccaaccttcaaaacagattcagtgtttggtctctccatgtttaagtggacttgatgtgtaactatgcagctagtcgttattgaaca-aggggactatat 38377684  T
Q  521 aaa--gagtgagaaaagatgaagtttggaggttggtaactgtctgaaaaatttaat--ttaatttctgttgctacatcacaaacatgctctaggatttgc 616  Q
    | |  ||||||||||| |||||||||||||||||||||||||||||||  || |||  |||||||||||||||||||||   ||||||||||||||||||    
T  38377683 atatagagtgagaaaatatgaagtttggaggttggtaactgtctgaaaggttcaatatttaatttctgttgctacatca---acatgctctaggatttgc 38377587  T
Q  617 atgctctcttgcaccaaactttctgattaaatttccttctcaatcatatatttgtcaatccttattatgttcctt 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  38377586 atgctctcttgcaccaaactttctgattaaatttccttctcaatcatatatttatcaatcc-tattatgttcctt 38377513  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 236 - 387
Target Start/End: Complemental strand, 38378240 - 38378088
Alignment:
Q  236 tctaggtatctcaccattcctttagaatcagtactactccattgagatgaagattgtgaaccgttcttgacaaacttttggccatggaaaattaaggaaa 335  Q
    |||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||||||  |||||||||||||||||  ||   ||||||||||||||    
T  38378240 tctaggtatctcaccattcctttagaatcaataatactccaatgagatgaagactgtgaagtgttcttgacaaacttttcaccgcagaaaattaaggaaa 38378141  T
Q  336 ttgcaaa--agaaagtgaaacaattaggacatagtattaattaactaagaggaa 387  Q
     ||||||  |||| | |||||||||||||  |||||||||||||| ||||||||    
T  38378140 atgcaaagtagaatg-gaaacaattaggaattagtattaattaaccaagaggaa 38378088  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 13298529 - 13298575
Alignment:
Q  76 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaa 122  Q
    ||||||||||||||  ||||||||| ||||||||| |||||||||||    
T  13298529 aatttgaacaaatcactattgttctgtgatatgctatttagtacaaa 13298575  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 39647320 - 39647243
Alignment:
Q  45 atagtggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaa 122  Q
    |||||||||||||||||||||| ||||    |||||||| ||||||||||||||||  |||||||||||||| |||||    
T  39647320 atagtggtgctataacgctatactgtagtggaatttgaataaatcgttattgttctgcgatatgctgtttagcacaaa 39647243  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 39647188 - 39647139
Alignment:
Q  76 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatg 125  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  39647188 aatttgaacaaatcgttattgttctgcgatatgctatttagtacaaaatg 39647139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 8928459 - 8928401
Alignment:
Q  77 atttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaata 135  Q
    |||||||||||||| |||||||| |||||| ||| ||||||||||||| || |||||||    
T  8928459 atttgaacaaatcgctattgttcgatgatacgctatttagtacaaaatattctgaaata 8928401  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 11257713 - 11257779
Alignment:
Q  61 gctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 127  Q
    ||||||||||| |  ||| ||||||||||| ||||||| || |||||||| ||||||||||||||||    
T  11257713 gctatagtgtagcggaatatgaacaaatcgctattgttatacgatatgctatttagtacaaaatgtt 11257779  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 2219599 - 2219538
Alignment:
Q  63 tatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaat 124  Q
    |||||||||  | |||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  2219599 tatagtgtagtagaatttgaacatatcgttattgttctctgatatgctatttagtacaaaat 2219538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 23117446 - 23117361
Alignment:
Q  50 ggtgctataacgctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaata 135  Q
    |||| ||||||||||| |  || || ||||||||||||||| |||| ||| |||||||||| ||||| |||||||||| |||||||    
T  23117446 ggtgttataacgctattgaatagcagaatttgaacaaatcgctatttttccatgatatgctatttagcacaaaatgttgtgaaata 23117361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 24672350 - 24672266
Alignment:
Q  61 gctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgttttgaaatattggatacaa 145  Q
    |||||||  |||||||||||| |||||| ||||||||||||  ||| ||| ||||||||| ||| |||| ||||| ||| |||||    
T  24672350 gctatagcataacataatttgcacaaatagttattgttctacaatacgctatttagtacataatattttcaaatagtggctacaa 24672266  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 23218681 - 23218630
Alignment:
Q  76 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 127  Q
    |||||| ||||||||| |||||||||||||| ||| |||| |||||||||||    
T  23218681 aatttggacaaatcgtcattgttctatgatacgctatttaatacaaaatgtt 23218630  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 33651641 - 33651706
Alignment:
Q  62 ctatagtgtaacataatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 127  Q
    |||||||||| ||  ||| |||||||||||||||||||||  ||||||| ||||||| ||||||||    
T  33651641 ctatagtgtagcagtattcgaacaaatcgttattgttctacaatatgctatttagtataaaatgtt 33651706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 6026031 - 6025980
Alignment:
Q  76 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 127  Q
    ||||||||||||| ||||||||||   |||||||| ||||||||||||||||    
T  6026031 aatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgtt 6025980  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 2732936 - 2732987
Alignment:
Q  76 aatttgaacaaatcgttattgttctatgatatgctgtttagtacaaaatgtt 127  Q
    ||||||||||||||| ||||||| |  |||||||| ||||||||||||||||    
T  2732936 aatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgtt 2732987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 17333566 - 17333528
Alignment:
Q  61 gctatagtgtaacataatttgaacaaatcgttattgttc 99  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  17333566 gctatagtgtagcgtaatttgaacaaatcgttattgttc 17333528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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