View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3210R-Insertion-4 (Length: 760)
Name: NF3210R-Insertion-4
Description: NF3210R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3210R-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 192 - 760
Target Start/End: Complemental strand, 17573812 - 17573220
Alignment:
| Q |
192 |
ttaatcccttataatttaaactttggatcggggtgttacatttaatt--gaggttaaaactgtttatattttcactgcatgcatcttt-gcctcccttat |
288 |
Q |
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| T |
17573812 |
ttaatcccttatattttaaactttggatcagggtgttacatttaattttgagcttaaaactgtttatattttcactgcatgcatcttttgcctcccttgt |
17573713 |
T |
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| Q |
289 |
catgattcatgtgtttttag-agggtaatcaagtggttaatcatcttcacttaaggtcaaattgttctagagaaatcaagtttgaatcctag-------- |
379 |
Q |
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| T |
17573712 |
cctgattcatgtgttttttttagggtaatcgagtcgttaatcaacttcacttaaggtcaaattgttctagagaaatcaagtttgaatcctagctgaaaca |
17573613 |
T |
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| Q |
380 |
------------acttaacttatctctcggctgaacttagaattaccatggccgctttccacgggaacgagagggttatgaattacatatcactcgattg |
467 |
Q |
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| T |
17573612 |
atcattatctagatttaatttatctctcggctgaacttagaattaccaaggccgcgttccatgggaatgagagggtaataaattacatatcactcaattt |
17573513 |
T |
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| Q |
468 |
aatagataaaataaacagcaatttcttaggttctgaatgtatcaaaatttgttgaatattttttaatctgtgttttgatagtctgattatgcgtgaaatt |
567 |
Q |
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| T |
17573512 |
aatagataaaataaacagcaatttcttaggttctgaatgtatcaaaatttgttcaatatttttgaatctgtgttttgatagtctgattatgcgtgaaatt |
17573413 |
T |
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| Q |
568 |
cgtcttctattaattaactaattagttttgtcctcgaatgtgtctactactggtcaatttggtccataaattactaacataagaccctttcaaaaatgtt |
667 |
Q |
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| T |
17573412 |
cgtcttctattaattaactaattagttttgtcctcgaatgtgtctactactggtcaatttggtccataaattactaacataagaccctttcaaaaatgtt |
17573313 |
T |
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| Q |
668 |
tttgaactttctcaacggggtaatagttattttggttcctgaatatgcaacatagtcataatagtctatcaatgtatcgaaatttcaaattgg |
760 |
Q |
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| T |
17573312 |
tatgaactttctcaacggggtaatagttattttggttcctgaatatgcaacgtagtcataatagtctatcaatgtatcgaaatttcaaattgg |
17573220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 17574029 - 17573873
Alignment:
| Q |
16 |
ccttcacttttattcaacttagtcaattatttatttttcatgtgtaattttacgtatgtctcttatattttcagccttttggagaggttcctcttgttca |
115 |
Q |
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| T |
17574029 |
ccttcaattttattcaacttagtcaattatttatttttcatgtgtaattttacctttatctcttatattttcagccttttggagaggttcctcttgttca |
17573930 |
T |
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| Q |
116 |
agatggtgattataccctctatggttagccacctcatccctttactattttctgcaa |
172 |
Q |
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| T |
17573929 |
agatggtgattataccctctatggttagccacctcatccctttactattttctgcaa |
17573873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 756
Target Start/End: Original strand, 17381280 - 17381354
Alignment:
| Q |
684 |
ggggtaatagttattttggttcctgaatatgcaaca--tagtcataatagtctatcaatgtatcgaaatttcaaa |
756 |
Q |
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| T |
17381280 |
ggggtaatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaaatttcaaa |
17381354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 756
Target Start/End: Original strand, 12922168 - 12922236
Alignment:
| Q |
690 |
atagttattttggttcctgaatatgcaaca--tagtcataatagtctatcaatgtatcgaaatttcaaa |
756 |
Q |
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| T |
12922168 |
atagttattttggtccctgaatgtgtaataagtagtcacaatagtatttcaatgtatcgaaatttcaaa |
12922236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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