View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3210R-Insertion-5 (Length: 664)
Name: NF3210R-Insertion-5
Description: NF3210R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3210R-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 6e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 16515120 - 16514890
Alignment:
| Q |
17 |
aggacatgtgaccccttaaaaggatacaggagattgcttaagaaaaacgtggacgtcaatgttggaaaaatgcatttttt--atccaagaaactaacgaa |
114 |
Q |
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| T |
16515120 |
aggacatgtgaccccctaaaaggatacaggagattgcttaagaaaaacgtgg---tcaatgttagaaaaatgcgttttttttatccaacaaactaactaa |
16515024 |
T |
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| Q |
115 |
agacatcaaatacaaaaataatgagaaatgcataaaatatggctgctcaagaacttttgttgtgaagtcaagataagctgcataaaatatcatagaagcc |
214 |
Q |
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| T |
16515023 |
agacatcaaatacaaaataaatgagaagtgcataaaatatggctgctcaagaacttttgttgcaaagtcaagataagcagcataaaatatcatagaagcc |
16514924 |
T |
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| Q |
215 |
agccatccatgtattttgataatataactagtaa |
248 |
Q |
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| T |
16514923 |
agccacccatgtagtttgatatgaaaactagtaa |
16514890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 372 - 584
Target Start/End: Complemental strand, 16514785 - 16514573
Alignment:
| Q |
372 |
catgtcaaggtgaatagggttattgcatgagctat--tagttctagggaagttgggaatatgaattagccaaccttcacgatgaatcttcttacagtaac |
469 |
Q |
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| T |
16514785 |
catgtgaaggtgaataggattattgcatgagctataatagttatagggaagatgagcaaatgaattagctaaccttcacaatgaatcttcttacagtaac |
16514686 |
T |
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| Q |
470 |
ccttcgcttttgtccaatacgatgaatcctcattattgcttgctcctcgactgcaggattccaccatgggatcctacattttcattacaaaaaactaaga |
569 |
Q |
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| T |
16514685 |
ccttcgcttttgcccaatacgatgaatcctcattattgcttgctcctcaactgcaggattccaccat-ggatcctacattttcattac-aaaaactcaga |
16514588 |
T |
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| Q |
570 |
aaactgtagttccac |
584 |
Q |
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| T |
16514587 |
aaattgtagtcccac |
16514573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 620 - 664
Target Start/End: Complemental strand, 16514530 - 16514486
Alignment:
| Q |
620 |
tatacataccattaggaaaacatttgaggctgctgtcaagttcaa |
664 |
Q |
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| T |
16514530 |
tatacataccattaggaaaacatttgaggctgcagtcaagttcaa |
16514486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 16514890 - 16514846
Alignment:
| Q |
208 |
agaagccagccatccatgtattttgataatataactagtaaaata |
252 |
Q |
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| T |
16514890 |
agaagccagccagccatgtagtttgataagaaaactagtaaaata |
16514846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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