View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3210R-Insertion-8 (Length: 245)

Name: NF3210R-Insertion-8
Description: NF3210R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3210R-Insertion-8
NF3210R-Insertion-8
[»] chr5 (9 HSPs)
chr5 (127-245)||(29568367-29568485)
chr5 (127-238)||(29168239-29168350)
chr5 (128-235)||(29569708-29569815)
chr5 (128-245)||(1758133-1758250)
chr5 (128-245)||(29425281-29425398)
chr5 (127-235)||(27918634-27918742)
chr5 (7-50)||(1758024-1758067)
chr5 (7-50)||(29568559-29568602)
chr5 (11-50)||(29569867-29569906)
[»] chr4 (8 HSPs)
chr4 (128-245)||(18986085-18986202)
chr4 (128-245)||(27521333-27521450)
chr4 (133-245)||(27461990-27462102)
chr4 (133-245)||(27482129-27482241)
chr4 (7-50)||(27461876-27461919)
chr4 (7-50)||(27482015-27482058)
chr4 (7-50)||(27521516-27521559)
chr4 (7-50)||(18985976-18986019)
[»] chr3 (2 HSPs)
chr3 (127-235)||(25518468-25518576)
chr3 (7-50)||(25518357-25518400)


Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 29568485 - 29568367
Alignment:
Q  127 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568485 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 29568386  T
Q  227 aatgctcttagccactgtg 245  Q
    ||||||||||||| |||||    
T  29568385 aatgctcttagccgctgtg 29568367  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 29168239 - 29168350
Alignment:
Q  127 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 226  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29168239 ttctgctcaccaactatcatccaataagcattctttcaacgcaagcaatctcacccgtaatggcttctccaccattacacttcctttcagtctccgtggg 29168338  T
Q  227 aatgctcttagc 238  Q
    ||||||||||||    
T  29168339 aatgctcttagc 29168350  T

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Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 29569815 - 29569708
Alignment:
Q  128 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 227  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29569815 tctgctcaccaactatcatccaagaagcattcttccgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggca 29569716  T
Q  228 atgctctt 235  Q
    ||||||||    
T  29569715 atgctctt 29569708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 1758133 - 1758250
Alignment:
Q  128 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 227  Q
    ||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1758133 tctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgcggga 1758232  T
Q  228 atgctcttagccactgtg 245  Q
    |||||||||||| |||||    
T  1758233 atgctcttagccgctgtg 1758250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 29425281 - 29425398
Alignment:
Q  128 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 227  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  29425281 tctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtggga 29425380  T
Q  228 atgctcttagccactgtg 245  Q
    |||||||||||| |||||    
T  29425381 atgctcttagccgctgtg 29425398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 27918634 - 27918742
Alignment:
Q  127 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 226  Q
    |||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27918634 ttctgctcaccaactatcatccaagaagcattcttctggcgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggc 27918733  T
Q  227 aatgctctt 235  Q
    || ||||||    
T  27918734 aacgctctt 27918742  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 1758024 - 1758067
Alignment:
Q  7 catgttgatccctcacaaacagaaacaatccatgattattccaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1758024 catgttgatccctcacaaacagaaacaatccatgattattccaa 1758067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 29568602 - 29568559
Alignment:
Q  7 catgttgatccctcacaaacagaaacaatccatgattattccaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29568602 catgttgatccctcacaaacagaaacaatccatgattattccaa 29568559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 29569906 - 29569867
Alignment:
Q  11 ttgatccctcacaaacagaaacaatccatgattattccaa 50  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  29569906 ttgatccctcacaaacacaaacaatccatgattattccaa 29569867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 18986085 - 18986202
Alignment:
Q  128 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 227  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18986085 tctgctcaccaaccgtcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacactttctttcagtctccgtggga 18986184  T
Q  228 atgctcttagccactgtg 245  Q
    || ||||||||| |||||    
T  18986185 atactcttagccgctgtg 18986202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 27521450 - 27521333
Alignment:
Q  128 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 227  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  27521450 tctgcccaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcggga 27521351  T
Q  228 atgctcttagccactgtg 245  Q
    |||||||||||| |||||    
T  27521350 atgctcttagccgctgtg 27521333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 27461990 - 27462102
Alignment:
Q  133 tcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgct 232  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  27461990 tcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgtggaaatgct 27462089  T
Q  233 cttagccactgtg 245  Q
    ||||||| |||||    
T  27462090 cttagccgctgtg 27462102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 27482129 - 27482241
Alignment:
Q  133 tcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgct 232  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  27482129 tcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacaattcctttcagtctccgcgggaatgct 27482228  T
Q  233 cttagccactgtg 245  Q
    ||||||| |||||    
T  27482229 cttagccgctgtg 27482241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 27461876 - 27461919
Alignment:
Q  7 catgttgatccctcacaaacagaaacaatccatgattattccaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27461876 catgttgatccctcacaaacagaaacaatccatgattattccaa 27461919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 27482015 - 27482058
Alignment:
Q  7 catgttgatccctcacaaacagaaacaatccatgattattccaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27482015 catgttgatccctcacaaacagaaacaatccatgattattccaa 27482058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 27521559 - 27521516
Alignment:
Q  7 catgttgatccctcacaaacagaaacaatccatgattattccaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27521559 catgttgatccctcacaaacagaaacaatccatgattattccaa 27521516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 18985976 - 18986019
Alignment:
Q  7 catgttgatccctcacaaacagaaacaatccatgattattccaa 50  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  18985976 catggtgatccctcacaaacagaaacaatccatgattattccaa 18986019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 25518468 - 25518576
Alignment:
Q  127 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 226  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  25518468 ttctcctcaccaaccatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtcttcgtggt 25518567  T
Q  227 aatgctctt 235  Q
    |||||||||    
T  25518568 aatgctctt 25518576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 25518357 - 25518400
Alignment:
Q  7 catgttgatccctcacaaacagaaacaatccatgattattccaa 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25518357 catgttgatccctcacaaacagaaacaatccatgattattccaa 25518400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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