View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3210_high_1 (Length: 675)

Name: NF3210_high_1
Description: NF3210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3210_high_1
NF3210_high_1
[»] chr3 (1 HSPs)
chr3 (1-659)||(24168541-24169199)


Alignment Details
Target: chr3 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 1 - 659
Target Start/End: Original strand, 24168541 - 24169199
Alignment:
Q  1 taccttgccgagtaaggcatcaattacctacaaattgtcacccaaatgaaatcagaaataggacggcaggaaccaaaggaatttatatatagatgttcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24168541 taccttgccgagtaaggcatcaattacctacaaattgtcacccaaatgaaatcagaattaggacggcaggaaccaaaggaatttatatatagatgttcct 24168640  T
Q  101 ttaaaacaatattcatatttgaaattgttatgtattcaactgcatttcaattcagttagcattatattttcctattgttatgaaaatagataaataaacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24168641 ttaaaacaatattcatatttgaaattgttatgtattcaactgcatttcaattctgttagcattatattttcctattgttatgaaaatagataaataaacg 24168740  T
Q  201 cacaaagttcagccaatttcgcatacgtctctaacaacatagggtcttttgtagtttttcgattatgcaatccttaggatcgcagagtacaacgcaattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24168741 cacaaagttcagccaatttcgcatacgtctctaacaacatagggtcttttgtagtttttcgattatgcaatccttaggatcgcagagtacaacgcaattt 24168840  T
Q  301 ttaaatactacaatcatgtttacaagttttccctgaatcgtactgctatgctcgagctactgtccacttatcggcaaatatgagtcatactcgagatcaa 400  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24168841 ttaaatactacaatcatgtttgcaagttttccctgaatcgtactgctatgctcgagctactgtccacttatcggcaaatatgagtcatactcgagatcaa 24168940  T
Q  401 tcttacccttttataaataaatacattttacatatttagtgattaatatactcattttctacatagtcatctaataatcagtaatatacaacattgcaac 500  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24168941 tcctacccttttataaataaatacattttacatatttagtgattaatatactcattttctacatagtcatctaataatcagtaatatacaacattgcaac 24169040  T
Q  501 aaaccagtaaagatcttaccgaccattgtattcagaggcagatcatcaattccatccgtctctctaagataagcctgaagaagtctgagtccaaagtgat 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24169041 aaaccagtaaagatcttaccgaccattgtattcagaggcagatcatcaatcccatccgtctctctaagataagcctgaagaagtctgagtccaaagtgat 24169140  T
Q  601 caaaaaggaaagcaagaacattggtagtcttggtttcttcattcaaaaactcttcagat 659  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24169141 caaaaaggaaagcaagaacattggtagtcttggtttcttcattcaaaaactcttcagat 24169199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University