View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3210_high_3 (Length: 259)

Name: NF3210_high_3
Description: NF3210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3210_high_3
NF3210_high_3
[»] chr1 (21 HSPs)
chr1 (18-160)||(19139826-19139968)
chr1 (18-160)||(13505016-13505158)
chr1 (18-160)||(13649066-13649208)
chr1 (18-160)||(13419898-13420040)
chr1 (18-147)||(13542238-13542367)
chr1 (18-146)||(20476555-20476683)
chr1 (18-145)||(15900186-15900313)
chr1 (18-146)||(13669593-13669721)
chr1 (18-145)||(20367483-20367610)
chr1 (18-160)||(13609587-13609728)
chr1 (18-160)||(16469389-16469522)
chr1 (18-146)||(13683692-13683814)
chr1 (18-151)||(16497491-16497615)
chr1 (158-213)||(13420074-13420129)
chr1 (158-213)||(13505192-13505247)
chr1 (178-213)||(13542437-13542472)
chr1 (158-213)||(13609762-13609817)
chr1 (158-213)||(13649242-13649297)
chr1 (158-213)||(16469300-16469355)
chr1 (158-213)||(19139737-19139792)
chr1 (173-211)||(15900084-15900122)
[»] scaffold0006 (3 HSPs)
scaffold0006 (18-160)||(138247-138389)
scaffold0006 (18-146)||(167207-167335)
scaffold0006 (158-213)||(138423-138478)
[»] chr6 (3 HSPs)
chr6 (18-139)||(22285100-22285221)
chr6 (44-146)||(21813312-21813414)
chr6 (158-229)||(22284973-22285045)
[»] scaffold0012 (2 HSPs)
scaffold0012 (18-146)||(114801-114929)
scaffold0012 (90-146)||(107168-107224)
[»] chr8 (1 HSPs)
chr8 (18-146)||(20815711-20815839)
[»] scaffold0069 (1 HSPs)
scaffold0069 (18-145)||(25489-25616)
[»] scaffold0068 (2 HSPs)
scaffold0068 (18-147)||(42096-42225)
scaffold0068 (178-210)||(41994-42026)
[»] chr2 (2 HSPs)
chr2 (18-146)||(38058685-38058813)
chr2 (178-213)||(38058579-38058614)
[»] scaffold0406 (1 HSPs)
scaffold0406 (18-146)||(9148-9276)


Alignment Details
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 19139968 - 19139826
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||| |||||||||||| ||||||||| |||||||    
T  19139968 aattctatgaaagagatagtgttcagagacaacaattcaaatgaaaataatgatataactgatgaaaaaattgagtttcttcaattgcgttctttgactt 19139869  T
Q  118 tagaacatttggagacacttgacaatttcatctcatatcattt 160  Q
    |||||||||||||||||||||| |||||| |||||||| ||||    
T  19139868 tagaacatttggagacacttgataatttcttctcatattattt 19139826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 13505016 - 13505158
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| |||||||    
T  13505016 aattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatattactgatgaaaaaatcgagtttcttcaattgcgttctttgactt 13505115  T
Q  118 tagaacatttggagacacttgacaatttcatctcatatcattt 160  Q
    |||||||||||||||||||||| |||||| |||||||| ||||    
T  13505116 tagaacatttggagacacttgataatttcttctcatattattt 13505158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 13649066 - 13649208
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| |||||||    
T  13649066 aattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatattactgatgaaaaaatcgagtttcttcaattgcgttctttgactt 13649165  T
Q  118 tagaacatttggagacacttgacaatttcatctcatatcattt 160  Q
    |||||||||||||||||||||| |||||| |||||||| ||||    
T  13649166 tagaacatttggagacacttgataatttcttctcatattattt 13649208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 13419898 - 13420040
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| |||||||    
T  13419898 aattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatattactgatgaaaaaatcgagtttcttcaattgcgttctttgactt 13419997  T
Q  118 tagaacatttggagacacttgacaatttcatctcatatcattt 160  Q
    ||||||||||||| |||||||| |||||| |||||||| ||||    
T  13419998 tagaacatttggaaacacttgataatttcttctcatattattt 13420040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 13542238 - 13542367
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    |||||||||||||| ||||||||  ||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||| || || |||||||    
T  13542238 aattctatgaaggaaatagtgtttgaagacaacaattcaagtgcaaataatgatataactgatgaaaaaattgagtttcttctattacgctctttgactt 13542337  T
Q  118 tagaacatttggagacacttgacaatttca 147  Q
    |||||||||||||||||||||| |||||||    
T  13542338 tagaacatttggagacacttgataatttca 13542367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 20476555 - 20476683
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| |||||||    
T  20476555 aattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttgactt 20476654  T
Q  118 tagaacatttggagacacttgacaatttc 146  Q
    ||||||||||| |||||||||| ||||||    
T  20476655 tagaacatttgaagacacttgataatttc 20476683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 15900313 - 15900186
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||||||  |||||||||||||| ||||||||||||||| |  ||||| ||| |||||||||||||| ||||||| |||||||    
T  15900313 aattctatgaaggagatagtgttcggagacaacaattcaagtgcaaataatgatatcaccgatgaaaaaattgagtttcttctactgcgttctttgactt 15900214  T
Q  118 tagaacatttggagacacttgacaattt 145  Q
    ||||||||||| |||||||||| |||||    
T  15900213 tagaacatttgcagacacttgataattt 15900186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 13669593 - 13669721
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||  ||||||||  |||||||||||||| |||||| |||||||| |||||||| ||| |||||||||||| ||||||||  |||||||    
T  13669593 aattctatgaaggaagtagtgttcggagacaacaattcaagtgcaaaaaatgatatcattgatgaaaaaattgagtttcttcaattgcgttttttgactt 13669692  T
Q  118 tagaacatttggagacacttgacaatttc 146  Q
    |||||||||||||||||||||| ||||||    
T  13669693 tagaacatttggagacacttgataatttc 13669721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 20367483 - 20367610
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| |||||||    
T  20367483 aattctatgaaggagatagtgttcagagacaacgattcaagtgctaataatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttgactt 20367582  T
Q  118 tagaacatttggagacacttgacaattt 145  Q
    ||||||||||| |||||||||| |||||    
T  20367583 tagaacatttgaagacacttgataattt 20367610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 13609587 - 13609728
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||||||  |||||||||||||| ||| |||||||| || || ||||| ||||  |||||||||| ||||||||| |||||||    
T  13609587 aattctatgaaggagatagtgttcggagacaacaattcaagtgctaataatgagatcatcgatgaaaaatc-gagtttcttcaattgcgttctttgactt 13609685  T
Q  118 tagaacatttggagacacttgacaatttcatctcatatcattt 160  Q
    ||||||||||||| |||||||| |||||| |||||||| ||||    
T  13609686 tagaacatttggaaacacttgataatttcttctcatattattt 13609728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 16469522 - 16469389
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||| ||||||||||||||| || |||||||||||||         || ||| |||||||||||| |||||| || |||||||    
T  16469522 aattctatgaaggagatagtgctcaaagacaacaatttaagtgcaaataatgat---------gaaaaaattgagtttcttcaattgcgatctttgactt 16469432  T
Q  118 tagaacatttggagacacttgacaatttcatctcatatcattt 160  Q
    |||||||||||||||||||||| |||||| |||| ||| ||||    
T  16469431 tagaacatttggagacacttgataatttcttctcttattattt 16469389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 13683692 - 13683814
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    |||||||||||||| |||||||||| |||||||||||||| ||| ||||      | | |||||| ||| | |||||||||| ||||||||| |||||||    
T  13683692 aattctatgaaggatatagtgttcagagacaacaattcaagtgctaata------tcagtgatgaaaaaatcgagtttcttcaattgcgttctttgactt 13683785  T
Q  118 tagaacatttggagacacttgacaatttc 146  Q
    |||||||||||||||||||||| ||||||    
T  13683786 tagaacatttggagacacttgataatttc 13683814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 16497615 - 16497491
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||| ||||||||||||||| || |||||||||         |||||| ||| |||||||||||| |||||  || || ||||    
T  16497615 aattctatgaaggagatagtgctcaaagacaacaatttaagtgcaaataa---------tgatgaaaaaattgagtttcttcaattgcaatctttaactt 16497525  T
Q  118 tagaacatttggagacacttgacaatttcatctc 151  Q
    |||||||||||||||||||||| |||||| ||||    
T  16497524 tagaacatttggagacacttgataatttcttctc 16497491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 13420074 - 13420129
Alignment:
Q  158 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 213  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  13420074 tttagagccgaatgtttctgcaccatttttcaattctcaggtatgttattttgttt 13420129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 13505192 - 13505247
Alignment:
Q  158 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 213  Q
    ||||||||||  || |||| |||||||||| |||| ||||||||||||||||||||    
T  13505192 tttagagccgtgtgattctgcaccattttttaatgctcaggtatgttattttgttt 13505247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 213
Target Start/End: Original strand, 13542437 - 13542472
Alignment:
Q  178 caccatttttcaatggtcaggtatgttattttgttt 213  Q
    ||||||||||||||| ||||||||||||||||||||    
T  13542437 caccatttttcaatgctcaggtatgttattttgttt 13542472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 13609762 - 13609817
Alignment:
Q  158 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 213  Q
    ||||||||||  || |||| |||||||||| |||| ||||||||||||||||||||    
T  13609762 tttagagccgtgtgattctgcaccattttttaatgctcaggtatgttattttgttt 13609817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 13649242 - 13649297
Alignment:
Q  158 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 213  Q
    ||||||||||  || |||| |||||||||| |||| ||||||||||||||||||||    
T  13649242 tttagagccgtgtgattctgcaccattttttaatgctcaggtatgttattttgttt 13649297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 16469355 - 16469300
Alignment:
Q  158 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 213  Q
    |||||||||  |||||||| |||||||||||  || ||||||||||||||||||||    
T  16469355 tttagagccttatgtttctacaccatttttcggtgctcaggtatgttattttgttt 16469300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 19139792 - 19139737
Alignment:
Q  158 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 213  Q
    ||||||||||  || |||| |||||||||| |||| ||||||||||||||||||||    
T  19139792 tttagagccgtgtgattctgcaccattttttaatgctcaggtatgttattttgttt 19139737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 15900122 - 15900084
Alignment:
Q  173 ttcttcaccatttttcaatggtcaggtatgttattttgt 211  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  15900122 ttctacaccatttttcaatgctcaggtatgttattttgt 15900084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 138247 - 138389
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| |||||||    
T  138247 aattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttgactt 138346  T
Q  118 tagaacatttggagacacttgacaatttcatctcatatcattt 160  Q
    |||||||||||||||||||||| |||||| |||||||| ||||    
T  138347 tagaacatttggagacacttgataatttcttctcatattattt 138389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 167207 - 167335
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||  ||||||||  |||||||||||||| |||||| |||||||| |||||||| ||| |||||||||||| ||||||||  |||||||    
T  167207 aattctatgaaggaagtagtgttcggagacaacaattcaagtgcaaaaaatgatatcattgatgaaaaaattgagtttcttcaattgcgttttttgactt 167306  T
Q  118 tagaacatttggagacacttgacaatttc 146  Q
    |||||||||||||||||||||| ||||||    
T  167307 tagaacatttggagacacttgataatttc 167335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 138423 - 138478
Alignment:
Q  158 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttgttt 213  Q
    ||||||||||  || |||| |||||||||| |||| ||||||||||||||||||||    
T  138423 tttagagccgtgtgattctgcaccattttttaatgctcaggtatgttattttgttt 138478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 22285221 - 22285100
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||| || ||||||||||||||  ||||||||||||||||| | |||| ||| |||||||||||||||||||||| |||||||    
T  22285221 aattctatgaaggagatagtgctcgaagacaacaattcatgtgcaaataatgatataactaatgaaaaaattgagtttcttctattgcgttctttgactt 22285122  T
Q  118 tagaacatttggagacacttga 139  Q
    ||||||||||||||||||||||    
T  22285121 tagaacatttggagacacttga 22285100  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 21813312 - 21813414
Alignment:
Q  44 agacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactttagaacatttggagacacttgacaat 143  Q
    |||||||||||||| |||||| |||||||| | |||||| ||| | |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||    
T  21813312 agacaacaattcaagtgcaaaaaatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttgactttagaacatttggagacacttgataat 21813411  T
Q  144 ttc 146  Q
    |||    
T  21813412 ttc 21813414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 22285045 - 22284973
Alignment:
Q  158 tttagagccgaatgtttcttcaccatttttcaatggtcaggtatgttattttg-tttcaaggttctctagata 229  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||||| |||| ||| ||| |||||||||||    
T  22285045 tttagagcggaatgtttctacaccatttttcaatgctcaggtatgttactttgtttttaagcttctctagata 22284973  T

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Target: scaffold0012 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 114801 - 114929
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| |||||||    
T  114801 aattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttgactt 114900  T
Q  118 tagaacatttggagacacttgacaatttc 146  Q
    |||||||||||||||||||||| ||||||    
T  114901 tagaacatttggagacacttgataatttc 114929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 107168 - 107224
Alignment:
Q  90 gagtttcttctattgcgttcattgactttagaacatttggagacacttgacaatttc 146  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||    
T  107168 gagtttcttcaattgcgttctttgactttagaacaattggagacacttgataatttc 107224  T

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Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 20815839 - 20815711
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| |||||||    
T  20815839 aattctatgaaggagatagtgttcagagacaacaattcaagtgctaataatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttgactt 20815740  T
Q  118 tagaacatttggagacacttgacaatttc 146  Q
    |||||||||||||||||||||| ||||||    
T  20815739 tagaacatttggagacacttgataatttc 20815711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 25489 - 25616
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||| ||||||||||||||||| |||||||||||||| ||| ||||||||||| | |||||| ||| |||||||||||| ||||||||| |||||||    
T  25489 aattctacgaaggagatagtgttcagagacaacaattcaagtgctaataatgatatcactgatgaaaaaattgagtttcttcaattgcgttctttgactt 25588  T
Q  118 tagaacatttggagacacttgacaattt 145  Q
    |||||||||||||||||||||| |||||    
T  25589 tagaacatttggagacacttgataattt 25616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 42225 - 42096
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    |||||||||| ||| ||||||||  ||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||||| || || |||||||    
T  42225 aattctatgagggaaatagtgtttgaagacaacaattcaagtgcaaataatgatataactgatgaaaaaattgagtttcttctattacgctctttgactt 42126  T
Q  118 tagaacatttggagacacttgacaatttca 147  Q
    |||||||||||||||||||||| |||||||    
T  42125 tagaacatttggagacacttgataatttca 42096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 42026 - 41994
Alignment:
Q  178 caccatttttcaatggtcaggtatgttattttg 210  Q
    ||||||||||||||| |||||||||||||||||    
T  42026 caccatttttcaatgctcaggtatgttattttg 41994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 38058813 - 38058685
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    ||||||||||||||||||||||||  ||| ||||| |||| ||||||||||||||| | |||||| ||| |||||||||||||||||||||| || ||||    
T  38058813 aattctatgaaggagatagtgttcggagataacaaatcaagtgcaaataatgatatcactgatgaaaaaattgagtttcttctattgcgttctttaactt 38058714  T
Q  118 tagaacatttggagacacttgacaatttc 146  Q
    |||||||||||||||||||||| ||||||    
T  38058713 tagaacatttggagacacttgataatttc 38058685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 213
Target Start/End: Complemental strand, 38058614 - 38058579
Alignment:
Q  178 caccatttttcaatggtcaggtatgttattttgttt 213  Q
    ||||||||||||||| ||||||||||||||||||||    
T  38058614 caccatttttcaatgctcaggtatgttattttgttt 38058579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 9276 - 9148
Alignment:
Q  18 aattctatgaaggagatagtgttcaaagacaacaattcaaatgcaaataatgatataattgatgagaaatttgagtttcttctattgcgttcattgactt 117  Q
    |||||| |||||||||||||||||| ||| |||||||||| ||| ||||||||||| | |||||| ||| | |||||||||| ||||||||| |||||||    
T  9276 aattctttgaaggagatagtgttcagagaaaacaattcaagtgctaataatgatatcactgatgaaaaaatcgagtttcttcaattgcgttctttgactt 9177  T
Q  118 tagaacatttggagacacttgacaatttc 146  Q
    |||||||||||||||||||||| ||||||    
T  9176 tagaacatttggagacacttgataatttc 9148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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