View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3210_high_4 (Length: 255)
Name: NF3210_high_4
Description: NF3210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3210_high_4 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23763 - 24002
Alignment:
| Q |
1 |
cctctgccagctcctgacactgtcacattgtaacagaatataatgaaattgtgagcaatcttctgatgtatgttaaggaattgacagaaaggaaatcaag |
100 |
Q |
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| T |
23763 |
cctctgccagctcctgacactgtcacattgtaacagaatataatgaaattgtgagcaatcttctgatgtatgttaaggaattgacagaaaggaaatcaag |
23862 |
T |
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| Q |
101 |
tactgtataataactagctaggcgtgcatgagaaaatcatttgcataaattctgcaaccatagaaatgctgaaaaattgttgacattgggaaatatgatt |
200 |
Q |
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| T |
23863 |
tactgtataataactagctaggcgtgcatgagaaaatcatttgcataaattctgcaaccatagaaatgctgaaaaattgttgacattgggaaatatgatt |
23962 |
T |
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| Q |
201 |
attctttgcattttgatgatcagactcacctgcttctgtg |
240 |
Q |
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| T |
23963 |
attctttgcattttgatgatcagactcacctgcttctgtg |
24002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10438400 - 10438148
Alignment:
| Q |
1 |
cctctgccagctcctgacactgtcacattgtaacagaatataatgaaattgtgagcaatcttc---------tgat------gtatgttaaggaattgac |
85 |
Q |
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| T |
10438400 |
cctctgccaactcctgacactgtca--tggtaacacaatataatgaaattgtgagcaatcttccaatgtccatgataaacatgtatgataaggaattgac |
10438303 |
T |
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| Q |
86 |
agaaaggaaatcaagtactgtataataactagctaggcgtgcatgagaaaatcatttgcataaattctgcaaccatagaaatgctgaaaaattgttgaca |
185 |
Q |
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| T |
10438302 |
agaaaggaaatcaagtattgtataataactagctaggcgtgcatgagaaaatcatttgcataaattctgcaaccatagaaatgctgaaaaattgttgtca |
10438203 |
T |
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| Q |
186 |
ttgggaaatatgattattctttgcattttgatgatcagactcacctgcttctgtg |
240 |
Q |
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| T |
10438202 |
ttgagaaatatgattattctttgcaattcgatgatcagactcacctgcttctgtg |
10438148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 89 - 240
Target Start/End: Complemental strand, 37575177 - 37575028
Alignment:
| Q |
89 |
aaggaaatcaagtactgtataataactagctaggcgtgcatgagaaaatcatttgcataaa-ttctgcaaccatagaaatgctgaaaaattgttgacatt |
187 |
Q |
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| T |
37575177 |
aaggaaatcaagt---gtatactaactagctaggcatgcatgagaaaatcatttgcgtaaaattctgcaaccataaaaatgctgaaaatttattgatatg |
37575081 |
T |
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| Q |
188 |
gggaaatatgattattctttgcattttgatgatcagactcacctgcttctgtg |
240 |
Q |
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| T |
37575080 |
ggaaaatatgactattgtttgcaattgaaagatcagactcacctgcttctgtg |
37575028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 37588902 - 37588846
Alignment:
| Q |
153 |
tgcaaccatagaaatgctgaaaaattgttgacattgggaaatatgattattctttgca |
210 |
Q |
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| T |
37588902 |
tgcaaccataaaaatgctgaaaaattattg-cacgggaaaatatgattattctttgca |
37588846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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