View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3210_low_4 (Length: 273)
Name: NF3210_low_4
Description: NF3210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3210_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 33983718 - 33983464
Alignment:
| Q |
18 |
gtttctgggttctttctttttcacatttcatttacaatttattttaggtgtatctccagaagctgtattttctatcggcttacaagtttaactgagggaa |
117 |
Q |
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| T |
33983718 |
gtttctgggttctttctttttctcatttcatttacaatttattttaggtgtatctccagaagctgtattttctatcggcttacaagtttaactgagggaa |
33983619 |
T |
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| Q |
118 |
taacagacatatgtttggagaaggtgggttgtgttgcgagcttgtcctccattgcaaatcgtcaactgtttttgtattctgaaagttagtttgaagatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33983618 |
taacagacatatgtttggagaaggtgggttgtgttgcgagcttgtcctccattgcaaatcgtcaactgtttttgtattctgaaagttagtttgaagatgc |
33983519 |
T |
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| Q |
218 |
acgtacaatatttgatttattcatctaccatgtcatgaatgcatgctggagattgc |
273 |
Q |
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| T |
33983518 |
acgtacaatatttgatttattcctctacc-tgtcatgtatgcatgcttgacattgc |
33983464 |
T |
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