View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_high_16 (Length: 360)
Name: NF3211_high_16
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 4775946 - 4775608
Alignment:
| Q |
1 |
attatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatggg |
100 |
Q |
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| T |
4775946 |
attatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatggg |
4775847 |
T |
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| Q |
101 |
ttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacattggagctacatctctatgtgcaaaccctgtctttca |
200 |
Q |
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| T |
4775846 |
ttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaagacaacattggagctacatatctatgtgcaaaccctgtctttc- |
4775748 |
T |
|
| Q |
201 |
gtactctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaa |
300 |
Q |
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| T |
4775747 |
--actctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttgccgccaagaagcttcaagtttcacatgtcccaacaagtcatcaa |
4775650 |
T |
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| Q |
301 |
ccagtcgatcttctaacaaagccgttatcctcggtacggcat |
342 |
Q |
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| T |
4775649 |
ccagtcgatcttctaacaaagccgttatcctcggtacggcat |
4775608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 43061307 - 43060970
Alignment:
| Q |
1 |
attatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaattaatatggg |
100 |
Q |
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| T |
43061307 |
attatctcttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaattaatatggg |
43061208 |
T |
|
| Q |
101 |
ttcaaaacttgttacaagaacttcaaattccattaacggcaccaacaatattcttagaaaacattggagctacatctctatgtgcaaaccctgtctttca |
200 |
Q |
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| T |
43061207 |
ttcaaaacttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacattagagctacatatctatgtgcaaaccctgtttttc- |
43061109 |
T |
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| Q |
201 |
gtactctaggatgaagcatattgccatagattatcattttgttcgcgatctcgt---tgccgccaagaagcttcaagtttcacatgtcccaacaagtcat |
297 |
Q |
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| T |
43061108 |
--actataggatgaaacacattgccatagattatcattttgtttgcgatctcgttgctgctgccaagaagcttcaagtttcacatgtcccaacaagtcat |
43061011 |
T |
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| Q |
298 |
caaccagtcgatcttctaacaaagccgttatcctcggtacg |
338 |
Q |
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| T |
43061010 |
cagctacccgatcttctcacaaagccgttatcctcggtacg |
43060970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 45192874 - 45192914
Alignment:
| Q |
160 |
aacattggagctacatctctatgtgcaaaccctgtctttca |
200 |
Q |
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| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgtccttca |
45192914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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