View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3211_high_17 (Length: 333)
Name: NF3211_high_17
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 17649248 - 17649550
Alignment:
| Q |
13 |
aatatataaacatatagagaactaaacatattcttcataaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17649248 |
aatatataaacatatagagaactaaacatattcttcatgaaatattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc |
17649347 |
T |
|
| Q |
113 |
tgaaagtgaagaggaaacagataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccgcacaag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17649348 |
tgaaagtgaagaggaaacagataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaac--cacaag |
17649445 |
T |
|
| Q |
213 |
aagtttatgacaccaacattgcagatatagagtatgactttgaagaaaatgttcaacatgtttatgagagtgaatctgaaggagtccttaatgctgatgg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17649446 |
aagtttatgacaccaacattgcagatatagagtatgactttgaagaaaatgttcaacatgttgatgagagtgaacctgaaggagtccttaatgctgatgg |
17649545 |
T |
|
| Q |
313 |
taatg |
317 |
Q |
| |
|
||||| |
|
|
| T |
17649546 |
taatg |
17649550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 50225012 - 50225095
Alignment:
| Q |
24 |
atatagagaactaaacatattcttcataaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcct |
113 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
50225012 |
atatagaaaactaaacatattcttcatgaaaaattataggaagccatgga------tttaaacatagatttaaacatcccttttaatcct |
50225095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 1328049 - 1328351
Alignment:
| Q |
13 |
aatatataaacatatagagaactaaacatattcttcataaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1328049 |
aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc |
1328148 |
T |
|
| Q |
113 |
tgaaagtgaagaggaaacagataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccgcacaag |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1328149 |
tgaaagtgaagaggaaacaaataatgatcctgaacattatgtggaagaaagtgaataggaaatagagattgttatgtttgatgaagaccaac--cacaag |
1328246 |
T |
|
| Q |
213 |
aagtttatgacaccaacattgcagatatagagtatgactttgaagaaaatgttcaacatgtttatgagagtgaatctgaaggagtccttaatgctgatgg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1328247 |
aagtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatgg |
1328346 |
T |
|
| Q |
313 |
taatg |
317 |
Q |
| |
|
||||| |
|
|
| T |
1328347 |
taatg |
1328351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 9794886 - 9794835
Alignment:
| Q |
13 |
aatatataaacatatagagaactaaacatattcttcataaaaaattatagga |
64 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
9794886 |
aatatataaacatatagagaactaaatatattcttcatgaaaaattatagga |
9794835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 10284395 - 10284446
Alignment:
| Q |
13 |
aatatataaacatatagagaactaaacatattcttcataaaaaattatagga |
64 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
10284395 |
aatatataaacatatagaggactaaacatattcttcatgaaaaattatagga |
10284446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 48922012 - 48921955
Alignment:
| Q |
52 |
aaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcct |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
48922012 |
aaaaattataggaagccatg-aaccacct---aacatagatttaaacatctattttaatcct |
48921955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 317
Target Start/End: Complemental strand, 42541506 - 42541204
Alignment:
| Q |
13 |
aatatataaacatatagagaactaaacatattcttcataaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42541506 |
aatatataaacatatagagaattaaacatattcttcatgaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc |
42541407 |
T |
|
| Q |
113 |
tgaaagtgaagaggaaacagataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccgcacaag |
212 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
42541406 |
tgaatgtgaagaggaaacaaataatgatcctgaacattatgtggaagaaagtgaagaggaaatatagattgttatgtttgatgaagaccaac--cacaag |
42541309 |
T |
|
| Q |
213 |
aagtttatgacaccaacattgcagatatagagtatgactttgaagaaaatgttcaacatgtttatgagagtgaatctgaaggagtccttaatgctgatgg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42541308 |
aagtttatgacaccaacattgcagatatagagtatgactttgaagataatgttcaacatgttaatgagagtgaacctgaaggagtccttaatgctgatgg |
42541209 |
T |
|
| Q |
313 |
taatg |
317 |
Q |
| |
|
||||| |
|
|
| T |
42541208 |
taatg |
42541204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 25594323 - 25594226
Alignment:
| Q |
15 |
tatataaacatatagagaactaaacatattcttcataaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc |
112 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25594323 |
tatatatacatataaagaactaaacatattcttcatgaaaaattataggaagccatgaaaccacctcttaacatagatttaaacatctcttttaatcc |
25594226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 35 - 317
Target Start/End: Original strand, 4745453 - 4745736
Alignment:
| Q |
35 |
taaacatattcttcataaaaaattataggaagccatggaaccacctcttaa---catagatttaaacatcccttttaatcctgaaagtgaagaggaaaca |
131 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4745453 |
taaacatattcttcatgaaaaattataggaagccatggaaccacctcttaataacatagatttaaacatcccttttaatcctgaaagtgaagaggaaaca |
4745552 |
T |
|
| Q |
132 |
gataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccgcacaagaagtttatgacaccaacat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4745553 |
gataatgatcctgaacattatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaac--cacaagaagtttatgacaccaacat |
4745650 |
T |
|
| Q |
232 |
tgcagatatagagtatgactttgaagaaaatgttcaacatgtttatgagagtgaatctgaaggagtccttaatgctgatggtaatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4745651 |
tgcagatatagagtatgactttgaagaaaatgttcaacatgttgatgagagtgaacctgaaggagtccttaatgctgatggtaatg |
4745736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 181025 - 180931
Alignment:
| Q |
14 |
atatataaacatatagagaactaaacatattcttcataaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcct |
113 |
Q |
| |
|
||||||| || |||||| |||||| |||||||||||| ||| ||||||||||| |||| |||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
181025 |
atatatatacttatagaaaactaa-catattcttcatgaaatattataggaagtcatg-aaccacct---aacatagatttaaacatccattttaatcct |
180931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 32058939 - 32058984
Alignment:
| Q |
68 |
catggaaccacctcttaacatagatttaaacatcccttttaatcct |
113 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32058939 |
catgaaaccccctcttaacatagatttaaacatccattttaatcct |
32058984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 9e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 15496519 - 15496389
Alignment:
| Q |
13 |
aatatataaacatatagagaactaaacatattcttcataaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15496519 |
aatatataaacatatagagaactaaacatattcttcatgaaaaattataggaagccatggaaccacctctttacatagatttaaacatcccttttaatcc |
15496420 |
T |
|
| Q |
113 |
tgaaagtgaagaggaaacagataatgatcct |
143 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
|
|
| T |
15496419 |
tgaaagtgaagaggaaacatataatgatcct |
15496389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 52575987 - 52575937
Alignment:
| Q |
13 |
aatatataaacatatagagaactaaacatattcttcataaaaaattatagg |
63 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52575987 |
aatatataaatatatagagaactaaacatattcttcatgaaaaattatagg |
52575937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 24177799 - 24177851
Alignment:
| Q |
10 |
aagaatatataaacatatagagaactaaacatattcttcataaaaaattatag |
62 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| ||| ||||||| |
|
|
| T |
24177799 |
aagagtatataaacatatagagaattaaacatattcttcatgaaagattatag |
24177851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 150 - 317
Target Start/End: Original strand, 42238790 - 42238955
Alignment:
| Q |
150 |
tatgtggaagaaagtgaagaggaaatagagattgttatgtttgatgaagaccaaccgcacaagaagtttatgacaccaacattgcagatatagagtatga |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||||| ||| |
|
|
| T |
42238790 |
tatgtggaagaaagtgaagaggaaatagagattgttatgtttgacgaagaccaacc--acaagaagttgatgacaccaacatttcagatatagagtttga |
42238887 |
T |
|
| Q |
250 |
ctttgaagaaaatgttcaacatgtttatgagagtgaatctgaaggagtccttaatgctgatggtaatg |
317 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
42238888 |
ctttgaagaaaatgttcaaccagttgatgagagtgaacttgaaggagtacttaattctgatggtaatg |
42238955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 42238520 - 42238620
Alignment:
| Q |
10 |
aagaatatataaacatatagagaactaaacatattcttcataaaaaattataggaagccatggaaccacctcttaacatagatttaaacatcccttttaa |
109 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42238520 |
aagagtatatatacatatagagaactaaacatattcttcatgaaaaattataggaagccatggaaccccctcttaacatagatttaaacatcccttttaa |
42238619 |
T |
|
| Q |
110 |
t |
110 |
Q |
| |
|
| |
|
|
| T |
42238620 |
t |
42238620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 7016571 - 7016472
Alignment:
| Q |
14 |
atatataaacatatagagaactaaacatattcttcataaaaaa-ttataggaagccatggaaccacctcttaacatagatttaaacatcccttttaatcc |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | ||| ||||||||||||||||||||||||||||| |
|
|
| T |
7016571 |
atatatacacatatagagaactaaacatattcttcataaaaaaattataggaatccatggaaccccatctcaacatagatttaaacatcccttttaatcc |
7016472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 10636798 - 10636747
Alignment:
| Q |
13 |
aatatataaacatatagagaactaaacatattcttcataaaaaattatagga |
64 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
10636798 |
aatatataaacatatagagtactaaacatattcttcatgaaaaattatagga |
10636747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 9978275 - 9978224
Alignment:
| Q |
13 |
aatatataaacatatagagaactaaacatattcttcataaaaaattatagga |
64 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
9978275 |
aatatataaacatatagagaattaaacatattcttcatgaaaaattatagga |
9978224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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