View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3211_high_2 (Length: 723)

Name: NF3211_high_2
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3211_high_2
NF3211_high_2
[»] chr2 (1 HSPs)
chr2 (1-719)||(4861063-4861782)


Alignment Details
Target: chr2 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 1 - 719
Target Start/End: Original strand, 4861063 - 4861782
Alignment:
Q  1 cccttatcattcattctttatgggtaagttcacccgtgtcaaacgaaacattttcatctatttctacttgcactatcattagtggcaatcttcaagacac 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4861063 cccttatcattcattctttatgggtaagttcacccgcgtcaaacgaaactttttcatctatttctacttgcaccatcattagtggcaatcttcaagacac 4861162  T
Q  101 actgcctgaacctccttgtctaaaagactttagatacaatgagttggttcaaccatcgactttaatatcacggtttgtttatgagggatccgaagaatca 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  4861163 actgcctgaacatccttgtctaaaagactttagatacaatgaactggttcaaccatcaactttaatatcacagtttgttcatgagggatccgaagaatca 4861262  T
Q  201 tcatatcaaattttaaacaatcatataaatgagttggacgacatattttaatccaaaacctgtagacattatacttataactcatttcacatataatgtg 300  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||    
T  4861263 tcatatcagattttaaacaatcatataagtgagttggacgacatattttaatccaaagcctttagacattatacttataagtcatttcacatataatgtg 4861362  T
Q  301 tttaacaatcannnnnnncttctaacgtgggactcttactcaattgatataccaatacttttaacactaatatgaaagttttgtctatatcttttgttgt 400  Q
    |||||||||||       ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4861363 tttaacaatcatttttttcttctaacgtgagactcttactcaattgatatacaaatacttttaacactaatatgaaagttttgtctatatcttttgttgt 4861462  T
Q  401 gtttcctctacccatctcttgtccgtacgtctcgtttttctttctctttcatatattctgtaattgagtatccgtgcgtcttctcaatttttaattatat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4861463 gtttcctctacccatctcttgtccgtacgtctcgtttttctttctctttcatatattctgtaattgagtatccgtgcgtcttctcaatttttaattatat 4861562  T
Q  501 gcaatttgtaattaagaaaatgtaaattccatccctattcatatctatgatgtatcaaaactatagtaac-aaccacgtacgtacgtacgtacacgaaac 599  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4861563 gcaatttgtcattaagaaaatgtaaattccatccctattcatatctatgatgtatcaaaactatagtaacaaaccacgtacgtacgtacgtacacgaaac 4861662  T
Q  600 aaattcagaagtgggtctataaccttggtacgtatggctaggaaattaaaaagaagatgccaaatatcatacactgacaaaataatctagcaatcccctt 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  4861663 aaattcagaagtgggtctataaccttggtacgtatggctaggaaattaaaaagaagatgccaaatatcatgcactgacaaaataatctatcaatcccctt 4861762  T
Q  700 tgctcacttatctgtgctcc 719  Q
    ||||||||||| ||||||||    
T  4861763 tgctcacttatttgtgctcc 4861782  T

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