View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_high_26 (Length: 259)
Name: NF3211_high_26
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 11730078 - 11729850
Alignment:
| Q |
13 |
cagacacttattttgtctatagtgaaaaagctttttaaaacatggattgttgcatgcatgaagatttctatacattaatatttctcatttaaatatctta |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11730078 |
cagacacttattttgtctatagtgaaaaagctttttaaaacattgattgttgcatgcatgaagatttctatacatcaatatttctcatttaaatatctta |
11729979 |
T |
|
| Q |
113 |
aaaaattcacctacatgtaacgaaagcatactgataggctcattataaactactcataatcgctccttttatggctataatcaaatgctaaaataatact |
212 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729978 |
aaaaattcaactacatgtaatgaaagcatactgataggctcattataaactactcataatcgctccttttatggctataatcaaatgctaaaataatact |
11729879 |
T |
|
| Q |
213 |
aaacaaccatgaaaaccattagccactat |
241 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
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|
| T |
11729878 |
aaacaaccatgaaaaccattaaccactat |
11729850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 23740390 - 23740162
Alignment:
| Q |
13 |
cagacacttattttgtctatagtgaaaaagctttttaaaacatggattgttgcatgcatgaagatttctatacattaatatttctcatttaaatatctta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23740390 |
cagacacttattttgtctatagtgaaaaagctttttaaaacattgattgttgcatgcatgaagatttctatacatcaatatttctcatttaaatatctta |
23740291 |
T |
|
| Q |
113 |
aaaaattcacctacatgtaacgaaagcatactgataggctcattataaactactcataatcgctccttttatggctataatcaaatgctaaaataatact |
212 |
Q |
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|
||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23740290 |
aaaaattcaacttcatgtaatgaaagcatactgataggctcattataaactactcataatcgctccttttatggctataatcaaatgctaaaataatact |
23740191 |
T |
|
| Q |
213 |
aaacaaccatgaaaaccattagccactat |
241 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
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| T |
23740190 |
aaacaaccatgaaaaccattaaccactat |
23740162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 50835208 - 50834980
Alignment:
| Q |
13 |
cagacacttattttgtctatagtgaaaaagctttttaaaacatggattgttgcatgcatgaagatttctatacattaatatttctcatttaaatatctta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
50835208 |
cagacacttattttgtctatagtgaaaaagctttttaaaacatggattgtggcatgcatgaagatttctatacatcaatatttctcatttaaatatctta |
50835109 |
T |
|
| Q |
113 |
aaaaattcacctacatgtaacgaaagcatactgataggctcattataaactactcataatcgctccttttatggctataatcaaatgctaaaataatact |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
50835108 |
aaaaattcacctacatgtaatgaaagcatactgataggctcattataaactactcataatcactccttttatggctataatcaaatgctaaaataattct |
50835009 |
T |
|
| Q |
213 |
aaacaaccatgaaaaccattagccactat |
241 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
50835008 |
aaacaaccatgaaaaccattaaccactat |
50834980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 50840645 - 50840873
Alignment:
| Q |
13 |
cagacacttattttgtctatagtgaaaaagctttttaaaacatggattgttgcatgcatgaagatttctatacattaatatttctcatttaaatatctta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
50840645 |
cagacacttattttgtctatagtgaaaaagctttttaaaacatggattgtggcatgcatgaagatttctatacatcaatatttctcatttaaatatctta |
50840744 |
T |
|
| Q |
113 |
aaaaattcacctacatgtaacgaaagcatactgataggctcattataaactactcataatcgctccttttatggctataatcaaatgctaaaataatact |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
50840745 |
aaaaattcacctacatgtaatgaaagcatactgataggctcattataaactactcataatcactccttttatggctataatcaaatgctaaaataattct |
50840844 |
T |
|
| Q |
213 |
aaacaaccatgaaaaccattagccactat |
241 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
50840845 |
aaacaaccatgaaaaccattaaccactat |
50840873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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