View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3211_high_36 (Length: 238)
Name: NF3211_high_36
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_high_36 |
 | |
|
| [»] chr8 (19 HSPs) |
| |
|
| [»] scaffold0070 (2 HSPs) |
| | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 19)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 22880532 - 22880752
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22880532 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacacaatagagtctatggtttgaatctcacaaacatgaacc |
22880631 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22880632 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctccacaacaatagctttggtggtcaaatgcctaaagagatatg |
22880731 |
T |
|
| Q |
218 |
ttggttgcgccggttaaagtt |
238 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
22880732 |
ttggttgcgccggttaaagtt |
22880752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 24890242 - 24890449
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||||| || |||||| || ||||||||||| ||||||| | |
|
|
| T |
24890242 |
aataattggtcaacatcctctcctgtatgcacttgggttggtgtcacttgtgatgagcgacacaacagagtccatagtttgaatctccataacatgagtc |
24890341 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
||||||||| | ||||||| | | | |||||| ||||||| |||||||||||| |||||| || ||||||||| ||||||| | |||||||||||| |
|
|
| T |
24890342 |
ttagaggtattgtttccccaaacctggggaatttgtcgttccttgttatacttaacctctccagcaatagcttcaatggtcagttttctaaagagatata |
24890441 |
T |
|
| Q |
218 |
ttggttgc |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
24890442 |
ttggttgc |
24890449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 25380031 - 25379813
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||| |||||| || |||||| |||||||||||||||||||||||| ||||| ||||||||| || |||||| ||| |||||||| | |
|
|
| T |
25380031 |
aataattggtcaacctcctcttctgtatgcaattgggttggtgtaacttgtgatgagcgacacaatagagtccatagtttgatcctccaaaacatgagtc |
25379932 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
|||||||||| ||||||| | | | |||||| |||| |||||||||||||||||||| | || |||||||| ||||||||| | |||| ||| |||| |
|
|
| T |
25379931 |
ttagaggtaccgtttccccaaacttggggaatctgtcctttcttgttatacttgacctaaaaaataatagcttcggtggtcagtttcctacggaggtatg |
25379832 |
T |
|
| Q |
218 |
ttggttgcgccggttaaag |
236 |
Q |
| |
|
| |||||||||| |||||| |
|
|
| T |
25379831 |
tcggttgcgccgattaaag |
25379813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 25501370 - 25501163
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |||||||||||| ||||||||||| ||||| || |||||| || ||||||||||| ||||||| | |
|
|
| T |
25501370 |
aataattggtcaacatcctctcatgtatgcacttgggttggtgtcacttgtgatgagcgacacaacagagtccatagtttgaatctccataacatgagtc |
25501271 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
||||||||| | ||||||| | | | |||||| ||||||| |||||||||||| |||||| || ||||||||| ||||||| | |||||||||||| |
|
|
| T |
25501270 |
ttagaggtattgtttccccaaacctggggaatttgtcgttccttgttatacttaacctctccagcaatagcttcaatggtcagttttctaaagagatata |
25501171 |
T |
|
| Q |
218 |
ttggttgc |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
25501170 |
ttggttgc |
25501163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 25428631 - 25428424
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
||||||||||||||||||||| || |||||| |||||||||||| ||||| ||||| ||||| || |||||| || |||||| |||| |||||||| | |
|
|
| T |
25428631 |
aataattggtcaacatcctcttctgtatgcacttgggttggtgtcacttgcgatgagcgacacaacagagtccatagtttgattctccgaaacatgagtc |
25428532 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
||||||||||| ||||||| | | | |||||| ||||||| |||||||||||| | |||| | ||||||||| |||||||| | ||||||||||||| |
|
|
| T |
25428531 |
ttagaggtactgtttccccaaacctggggaatttgtcgttccttgttatacttaatctctcccgcaatagcttcagtggtcagtttcctaaagagatata |
25428432 |
T |
|
| Q |
218 |
ttggttgc |
225 |
Q |
| |
|
| |||||| |
|
|
| T |
25428431 |
tcggttgc |
25428424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 25826057 - 25825850
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
||||||||||||||||||||| || |||||| |||||||||||| |||||||||| ||||| || |||||| || ||||||||||| |||||||| | |
|
|
| T |
25826057 |
aataattggtcaacatcctcttctgtatgcacttgggttggtgtcgcttgtgatgagcgacacaacagagtccatagtttgaatctccaaaacatgagtc |
25825958 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
||||||||| | ||||||| | | | |||||| ||||||| |||||||||||| |||||| || |||||| || ||||||| | ||||||||||||| |
|
|
| T |
25825957 |
ttagaggtattgtttccccaaacctggggaatttgtcgttccttgttatacttaacctctccagcaatagattcaatggtcagtttcctaaagagatata |
25825858 |
T |
|
| Q |
218 |
ttggttgc |
225 |
Q |
| |
|
| |||||| |
|
|
| T |
25825857 |
tcggttgc |
25825850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 25731019 - 25730801
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||| |||||| || |||||| |||||||||||||||||||||||| ||||| ||||||| | |||||| |||| ||| ||| | |
|
|
| T |
25731019 |
aataattggtcaacttcctcttctgtatgcaattgggttggtgtaacttgtgatgagcgacacggtagagtccacagtttgattctcctaaatatgtgtc |
25730920 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
|||||||||| ||||||| | | | |||||| |||| ||||||||||||||||||||| | ||||||||||| ||||||||| | |||| |||| ||| |
|
|
| T |
25730919 |
ttagaggtaccgtttccccaaacttggggaatctgtcctttcttgttatacttgacctcaaaaacaatagcttcggtggtcagcttcctacagagttatt |
25730820 |
T |
|
| Q |
218 |
ttggttgcgccggttaaag |
236 |
Q |
| |
|
| |||||||||| |||||| |
|
|
| T |
25730819 |
tcggttgcgccgattaaag |
25730801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 23262307 - 23262086
Alignment:
| Q |
17 |
aaataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaac |
116 |
Q |
| |
|
||||||||||||||| ||||| | |||||||||||||||||||||||||||| || ||||| |||||| | |||||||||||||||||||| |
|
|
| T |
23262307 |
aaataattggtcaaccacctcttcagtatgcagttgggttggtgtaacttgtgacgaccgacacggtagagttcacagtttgaatctcacaaacatgggt |
23262208 |
T |
|
| Q |
117 |
cttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatat |
216 |
Q |
| |
|
|||||||||||| ||||||| | | | |||||| | || || ||||||| ||||||||||| | |||||| ||||| ||||| | | ||||||||||||| |
|
|
| T |
23262207 |
cttagaggtactgtttccccaaacttggggaatctatctttccttgttaaacttgacctctcctacaatacctttgttggtccgtttcctaaagagatat |
23262108 |
T |
|
| Q |
217 |
gttggttgcgccggttaaagtt |
238 |
Q |
| |
|
|| ||||||| || |||||||| |
|
|
| T |
23262107 |
gtcggttgcgtcgattaaagtt |
23262086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 25688557 - 25688358
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||||||||||||||||||||||| ||||| |||||| || |||| | |||| |||||||| | |
|
|
| T |
25688557 |
aataattggtcaacatcctcttctgtatgtagttgggttggtgtaacttgtgatgagcgacacggaagagtccatagtttaattctccaaaacatgagtc |
25688458 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
||||||||| | ||||||| | | | ||||||||||| || || ||||||||||||||| | ||||||||||| |||||||| | ||||||||| |||| |
|
|
| T |
25688457 |
ttagaggtattgtttccccaaacttggggaatatgtccttcctagttatacttgacctcaaaaacaatagcttcagtggtcagtttcctaaagagttatg |
25688358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 25331411 - 25331193
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
||||||||||||||||||||| || |||| | ||||| |||||||||||||||||| || ||| ||||||| | |||||| |||| |||||||| | |
|
|
| T |
25331411 |
aataattggtcaacatcctcttctgtatgtaattgggctggtgtaacttgtgatgagcggcatggtagagtccacagtttgattctccaaaacatgagtc |
25331312 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
||||||| || ||||||| | | | |||||| |||| |||||||||||||||||||| | || |||||||| ||||||||| | |||| |||| |||| |
|
|
| T |
25331311 |
ttagaggcaccgtttccccaaacttggggaatctgtcctttcttgttatacttgacctaaaaaataatagcttcggtggtcagtttcctacagaggtatg |
25331212 |
T |
|
| Q |
218 |
ttggttgcgccggttaaag |
236 |
Q |
| |
|
| |||||||||| |||||| |
|
|
| T |
25331211 |
tcggttgcgccgattaaag |
25331193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 25486220 - 25486002
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||| |||||| || | ||||||||||||||||| ||||||||||| || || ||||| ||| |||||| |||| |||||||| | |
|
|
| T |
25486220 |
aataattggtcaacctcctcttctgtgtgcagttgggttggtgtcacttgtgatgagcgtcacggaagagtatatagtttgattctccgaaacatgagtc |
25486121 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
||||||||||| ||||||| | | ||||||||||| ||||||||||||||||||||| | |||||||| || |||||||| | ||| ||||| |||| |
|
|
| T |
25486120 |
ttagaggtactgtttccccaaatttagggaatatgtcctttcttgttatacttgacctcaaaaacaatagtttcggtggtcaatttcctcaagagttatg |
25486021 |
T |
|
| Q |
218 |
ttggttgcgccggttaaag |
236 |
Q |
| |
|
| ||||||| || |||||| |
|
|
| T |
25486020 |
tcggttgcgtcgattaaag |
25486002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 25599596 - 25599378
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||| |||||| || |||||| ||||| |||||||||||||||||| |||||| ||||||| || |||||| |||| | |||||| | |
|
|
| T |
25599596 |
aataattggtcaacctcctcttctgtatgcacttgggctggtgtaacttgtgatgagcgacatggtagagtccatagtttgattctccgagacatgagtc |
25599497 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
|||||||||| ||||||| | ||| |||||| |||| || |||||||| |||||||| | || |||||||| ||||||||| | | || |||| |||| |
|
|
| T |
25599496 |
ttagaggtaccgtttccccaaacatagggaatttgtcattccttgttatgcttgaccttaaaaataatagcttcggtggtcagtttcttagagagttatg |
25599397 |
T |
|
| Q |
218 |
ttggttgcgccggttaaag |
236 |
Q |
| |
|
| | |||||||| |||||| |
|
|
| T |
25599396 |
tcgcttgcgccgattaaag |
25599378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 24916957 - 24917156
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||| |||||| | |||||| |||||||||||||||||||||||| ||||| |||||| ||| |||||| |||| | ||||| | | |
|
|
| T |
24916957 |
aataattggtcaacctcctcttccgtatgcacttgggttggtgtaacttgtgatgagcgacacggtagagtttatagtttgattctccgacacatg-atc |
24917055 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
|||||||||| ||||||| | | | |||||| |||| || |||||||||||||||||| | ||||||||||| ||||||||| | |||| |||| |||| |
|
|
| T |
24917056 |
ttagaggtaccgtttccccaaacttggggaatttgtccttccttgttatacttgacctcaaaaacaatagcttcggtggtcagcttcctacagagttatg |
24917155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 25711196 - 25710978
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||| | ||| || |||||| ||||||||||||||||||||| || || || ||||||| | |||||| |||| ||| |||| | |
|
|
| T |
25711196 |
aataattggtcaactgcatcttctgtatgcaattgggttggtgtaacttgtgacgagcgtcacggtagagtccaaagtttgattctccaaaatatgagtc |
25711097 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
|||||||||| ||||||| | | | |||||| |||| ||||||||||||||||||||| | ||||||||||| ||||||||| | |||| |||| ||| |
|
|
| T |
25711096 |
ttagaggtaccgtttccccaaacttggggaatctgtcctttcttgttatacttgacctcaaaaacaatagcttcggtggtcagcttcctacagagttata |
25710997 |
T |
|
| Q |
218 |
ttggttgcgccggttaaag |
236 |
Q |
| |
|
| |||||||||| |||||| |
|
|
| T |
25710996 |
tcggttgcgccgattaaag |
25710978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 25470185 - 25469970
Alignment:
| Q |
21 |
aattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacctta |
120 |
Q |
| |
|
||||||||||| |||||| || |||||| |||||||||||||||||||||||| ||||| |||||| | |||||| |||| |||||||| |||| |
|
|
| T |
25470185 |
aattggtcaacctcctcttctgtatgcaattgggttggtgtaacttgtgatgagcgacacggaagagtccgtagtttgattctccgaaacatgagtctta |
25470086 |
T |
|
| Q |
121 |
gaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatgttg |
220 |
Q |
| |
|
|||||| |||| || | | | |||||| |||| |||||||||||||||||||| | || |||||||| ||||||||| | | || |||| ||||| | |
|
|
| T |
25470085 |
aaggtaccgtttctccaaacttggggaatctgtcatttcttgttatacttgacctaaaaaataatagcttcggtggtcagtttcttacagaggtatgtcg |
25469986 |
T |
|
| Q |
221 |
gttgcgccggttaaag |
236 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
25469985 |
gttgcgccgattaaag |
25469970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 25635645 - 25635438
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||| | ||| | |||| |||||||||||||| ||||||||||| ||||| ||||||||| | ||||||| | ||||||||| | |
|
|
| T |
25635645 |
aataattggtcaactacatcttatgtatgtagttgggttggtgtcacttgtgatgagcgacacaatagagtcaacagtttgaaaatatcaaacatgagac |
25635546 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
|| |||| |||||||| || | | | |||||| ||||||| |||||||||||| |||||| | ||||||| || |||||||| | ||||||||||||| |
|
|
| T |
25635545 |
ttggaggcactatttctccaaacctggggaatttgtcgttccttgttatacttaacctctcccacaatagtttcagtggtcagtttcctaaagagatata |
25635446 |
T |
|
| Q |
218 |
ttggttgc |
225 |
Q |
| |
|
| |||||| |
|
|
| T |
25635445 |
tcggttgc |
25635438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 25738406 - 25738287
Alignment:
| Q |
117 |
cttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatat |
216 |
Q |
| |
|
||||||||||| ||||||| | | | |||||| |||| ||||||||||||||||||||| | ||||||||||| ||||||||| | |||| |||| ||| |
|
|
| T |
25738406 |
cttagaggtaccgtttccccaaacttggggaatctgtcctttcttgttatacttgacctcaaaaacaatagcttcggtggtcagcttcctacagagttat |
25738307 |
T |
|
| Q |
217 |
gttggttgcgccggttaaag |
236 |
Q |
| |
|
|| |||||||||| |||||| |
|
|
| T |
25738306 |
gtcggttgcgccgattaaag |
25738287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 25408098 - 25407883
Alignment:
| Q |
21 |
aattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacctta |
120 |
Q |
| |
|
||||||||||| |||||| | |||||| |||||||||||| ||||||||||| ||||| |||||| || |||||| |||| |||||||| |||| |
|
|
| T |
25408098 |
aattggtcaacctcctcttttgtatgcaattgggttggtgtcacttgtgatgagcgacacggaagagtccatagtttgattctccgaaacatgagtctta |
25407999 |
T |
|
| Q |
121 |
gaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatgttg |
220 |
Q |
| |
|
||||| ||||||| | | | |||||| |||| ||| |||||||||||||| | | || |||||||||||||||||| | |||| |||| ||||| | |
|
|
| T |
25407998 |
aaggtatcgtttccccaaacttagggaatttgtccttttttgttatacttgacataaaaaataatagctttggtggtcagtttcctatagaggtatgtcg |
25407899 |
T |
|
| Q |
221 |
gttgcgccggttaaag |
236 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
25407898 |
attacgccgattaaag |
25407883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 25433787 - 25433569
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||| || ||| | |||||| |||| ||||||||||||||||||| || || |||||| | |||||| |||| |||||||| | |
|
|
| T |
25433787 |
aataattggtcaacctcatcttccgtatgcaattggattggtgtaacttgtgatgagcggcacggtagagttcacagtttgattctccgaaacatgagtc |
25433688 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
||||||| ||||||| | | | |||||| |||| || ||||||||||||||||| | |||||||| || ||||||||| | ||||||||| |||| |
|
|
| T |
25433687 |
aaggaggtaccgtttccccaaacttggggaatctgtccttccttgttatacttgacctaaaaaacaatagattcggtggtcagtttcctaaagagttatg |
25433588 |
T |
|
| Q |
218 |
ttggttgcgccggttaaag |
236 |
Q |
| |
|
|| ||||||||| |||||| |
|
|
| T |
25433587 |
ttcgttgcgccgattaaag |
25433569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 25416 - 25634
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||| |||||| | |||||| |||| ||||||||||||||||||| || || ||||||| | |||||| |||| |||||||| | |
|
|
| T |
25416 |
aataattggtcaacctcctcttccgtatgcaattggattggtgtaacttgtgatgagcggcacggtagagtccacagtttgattctccgaaacatgagtc |
25515 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
|||||||||| ||||||| | | ||||||||||| || |||||||||||||||||| | ||||||||||| ||||||||| | ||||||||| |||| |
|
|
| T |
25516 |
ttagaggtaccgtttccccaaatttggggaatatgtccttccttgttatacttgacctcaaaaacaatagcttcggtggtcagtttcctaaagagttatg |
25615 |
T |
|
| Q |
218 |
ttggttgcgccggttaaag |
236 |
Q |
| |
|
|| ||||||||| |||||| |
|
|
| T |
25616 |
ttcgttgcgccgattaaag |
25634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 41109 - 41315
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
||||||||||| ||||||||| | | ||||||||| ||||||| ||||||||||| ||||| |||||| || |||||| |||| ||||||||| | |
|
|
| T |
41109 |
aataattggtccacatcctcttcagtgtgcagttgg-ttggtgtcacttgtgatgagcgacacggaagagtccatagtttgattctctgaaacatgaatc |
41207 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
||| ||||||| ||| ||| | | |||||| | ||||| ||| ||||||| ||| ||| | |||||||||| ||||| ||| | || ||||||||||| |
|
|
| T |
41208 |
ttataggtactgttttccctgacttggggaatctttcgttccttattatactagacatctcccacaatagcttcggtggccagtttcccaaagagatatg |
41307 |
T |
|
| Q |
218 |
ttggttgc |
225 |
Q |
| |
|
| |||||| |
|
|
| T |
41308 |
tcggttgc |
41315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 10332318 - 10332098
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||| ||||| | |||||| |||||||||||| ||||||||| |||||| ||||||||| |||||| |||| |||||||| | |
|
|
| T |
10332318 |
aataattggtcaacctcctcatcggtatgcaattgggttggtgttgtttgtgatgagcgacatggtagagtctacagtttgattctccaaaacatgaggc |
10332219 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
||||||| | |||||||| | | | ||||| |||| |||||||||| ||||||||| | || |||||||||||||||||| | ||||||||| ||| |
|
|
| T |
10332218 |
ttagaggcaacatttccccaaacttggggaacttgtcctttcttgttacacttgaccttaaaaataatagctttggtggtcagttacctaaagagttatt |
10332119 |
T |
|
| Q |
218 |
ttggttgcgccggttaaagtt |
238 |
Q |
| |
|
| |||||||||| |||||||| |
|
|
| T |
10332118 |
tcggttgcgccgattaaagtt |
10332098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 23394179 - 23394398
Alignment:
| Q |
18 |
aataattggtcaacatcctctcctatatgcagttgggttggtgtaacttgtgatgaacgacataatagagtctatggtttgaatctcacaaacatgaacc |
117 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||||||||||| ||||||||||| |||| |||||||| | | |||| |||| |||||||| | |
|
|
| T |
23394179 |
aataattggtcaacctcctcttctgtatgcagttgggttggtgtcacttgtgatgagagacaccatagagtccacagcttgactctccgaaacatgagtc |
23394278 |
T |
|
| Q |
118 |
ttagaggtactatttccccgagcattgggaatatgtcgtttcttgttatacttgacctctacaacaatagctttggtggtcagatgcctaaagagatatg |
217 |
Q |
| |
|
|||| ||||| ||||| || | | |||||| |||| || ||||||||||||||| ||| |||| |||| |||||||| | || ||||||||||| |
|
|
| T |
23394279 |
ttagtggtacaatttctccaaagttggggaatctgtctttccttgttatacttgacatctctcgtaataactttagtggtcagtttcccaaagagatatg |
23394378 |
T |
|
| Q |
218 |
ttggttgcgccggttaaagt |
237 |
Q |
| |
|
| |||||||||| ||||||| |
|
|
| T |
23394379 |
tcggttgcgccgattaaagt |
23394398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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