View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_high_39 (Length: 228)
Name: NF3211_high_39
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_high_39 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 49772161 - 49771934
Alignment:
| Q |
1 |
gtattgccgtaaagttcttgcagagctgtttcttgatcagtgataaacccctagacaatatatatttcagaacacaaatcaatgttttctctcattcaaa |
100 |
Q |
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| T |
49772161 |
gtattgccgtaaagttcttgcagagctgtttcttgatcagtgataaacccctagacaatatatatttcagaacacaaatcaatgttttttctcattcaaa |
49772062 |
T |
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| Q |
101 |
cattatgtaaaaaggtcaaggtgattctttgcttaaaaatgagtacaaaaataagtgtaaccatacttaaagcagagtagcttcttaatacaatggcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49772061 |
cattatgtaaaaaggtcaaggtgattctttgcttaaaaattagtacaaaaataagtgtaaccatacttgaagcagagtagcttcttaatacaatggcatt |
49771962 |
T |
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| Q |
201 |
cacaaaagatggatagttaattttggat |
228 |
Q |
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| T |
49771961 |
cacaaaagatggatagttaattttggat |
49771934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 8005190 - 8005374
Alignment:
| Q |
3 |
attgccgtaaagttcttgcagagctgtttcttgatcagtgataaacccctagacaatatatatttcagaacacaaatcaatgttttctctcattcaaaca |
102 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8005190 |
attgccataaagttcttgcagagctgtttcttgatcagtgataaacccctagacaatatatatttcagaacacaaatcaatgttttctctcattcaaaca |
8005289 |
T |
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| Q |
103 |
ttatgtaaaaaggtcaaggtgattctttgcttaaaaatgagtacaaaaataagtgtaaccatacttaaagcagagtagcttcttaa |
188 |
Q |
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| T |
8005290 |
ttatgtaaaaaggtcaaggtgattctttcctt-aaaattaatacaaaaacaagtgtaactatgtttgaagcagagtagcttcttaa |
8005374 |
T |
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