View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_high_5 (Length: 562)
Name: NF3211_high_5
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Complemental strand, 10139866 - 10139447
Alignment:
| Q |
17 |
atgttagtgttgcaaaatact--tatgtataaattgaatgcgagtttagtagaatcacaatgattaactataaaataaaagttacattttattgctttaa |
114 |
Q |
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| T |
10139866 |
atgttagtggtgcaaaatactagtatgtatgaattgaatgcgagtttagtataatcacaatgattaactataaaataaaagttgcatttaattgctttaa |
10139767 |
T |
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| Q |
115 |
tacaattatattcactgcgattttaaattatctatttctaatcgaccgtttttattagtatctcaaaccaannnnnnnacaaccataaaactcaaattag |
214 |
Q |
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| T |
10139766 |
tacaatcatattcactgcaattttaaattatctatttctaatcgaccatttttattggtatctcaaaccaatttttttacaaccataaaactcaaatcag |
10139667 |
T |
|
| Q |
215 |
agttattactttaaagatccgagttcaatttcaaatttaatgtcagttatgcaacgaattaataaactaatataatttcatttctttttcttcttatttt |
314 |
Q |
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| T |
10139666 |
agttattactttaaagatcctagttcaatttcaaatttaatgtgagttatgcaacgaattaataaactaatataatttcatttctttttcttcttatttt |
10139567 |
T |
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| Q |
315 |
atcaatgatgcttcatattttccctatctatctatct----atctcacgagattctactattattatcaccaccctcatctaatctacccctaagtatac |
410 |
Q |
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| T |
10139566 |
atcaatgatgcttcatattttccctatctatctatctatctatctcacgagattctactattattatcaccaccctcatctaatctacccctaagtatac |
10139467 |
T |
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| Q |
411 |
caataatttatctacattat |
430 |
Q |
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| T |
10139466 |
caataatttatctacattat |
10139447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 493 - 546
Target Start/End: Complemental strand, 10139384 - 10139331
Alignment:
| Q |
493 |
ctctcttctctcaaataacgccgaacccccatttcttcaatccctaatattcat |
546 |
Q |
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| T |
10139384 |
ctctcttctctcaaataacgccgaacccccatttcttcaatccctaatattcat |
10139331 |
T |
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