View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_high_7 (Length: 465)
Name: NF3211_high_7
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 172 - 450
Target Start/End: Complemental strand, 25614542 - 25614264
Alignment:
| Q |
172 |
cttggccactaaagtaataaagatcgagcaaaaagacaagtaaatagcaaatgataaaatcaaagatggaaggaccacttgtggcagaaataattaagaa |
271 |
Q |
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| T |
25614542 |
cttggccactaaagcaataaagatcgagcaaaaaggcaagtaaatagcaaatgataaaatcaaagatggaaggaccacttgtggcagaaataattaagaa |
25614443 |
T |
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| Q |
272 |
tcattgacactgccacactactcaaaatggtcatataggttgcatgaaagctatgcacaaaaatagaaattattggttacgtgatcctgctacttgtagt |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25614442 |
tcattgacactgccacactactcaaaatggtcatataggttgcatgaaagctatgcacaaaaatagaaattattggttacgtgatcctgctacttgtagt |
25614343 |
T |
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| Q |
372 |
aatatttcaagtttcaacgttaattcaaaccaataattcatgtatacacgttaaaacaactttgtcactttccttaggt |
450 |
Q |
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| T |
25614342 |
aatatttcaagtttcaacgttaattcaaaccaataattcatgtatacacgttaaaacaactttgtcactttccttaggt |
25614264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 25614698 - 25614643
Alignment:
| Q |
17 |
agatctcagaagaactgatccaacaagttaagaataaaaccaagatgcaaatgagt |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25614698 |
agatctcagaagaactgatccaacaagttaagaataaaaccaagatgcaaatgagt |
25614643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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