View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3211_low_1 (Length: 754)

Name: NF3211_low_1
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3211_low_1
NF3211_low_1
[»] chr1 (10 HSPs)
chr1 (6-481)||(12540801-12541275)
chr1 (25-120)||(12532769-12532864)
chr1 (530-614)||(12541275-12541359)
chr1 (338-453)||(12534973-12535092)
chr1 (39-153)||(12535197-12535311)
chr1 (346-397)||(47569740-47569791)
chr1 (38-87)||(12538581-12538630)
chr1 (346-410)||(28239767-28239831)
chr1 (463-506)||(12531936-12531979)
chr1 (350-396)||(14508386-14508432)
[»] chr6 (2 HSPs)
chr6 (6-141)||(384373-384508)
chr6 (353-412)||(384134-384193)
[»] chr2 (2 HSPs)
chr2 (129-242)||(36007875-36007987)
chr2 (346-388)||(16375795-16375837)


Alignment Details
Target: chr1 (Bit Score: 166; Significance: 2e-88; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 6 - 481
Target Start/End: Original strand, 12540801 - 12541275
Alignment:
Q  6 acaagtggtgaaagctgttaaaagagcagcagctgtgctgataaaacgcggtgtcaaacctgatcgtgctggttatcaatccatgaggggtggactgttc 105  Q
    ||||| ||||| ||||| |||||||||||  ||||| |||||||||||||||||||||||||||| |||| ||| ||||||| ||   |||||||| | |    
T  12540801 acaagaggtgacagctgctaaaagagcagttgctgttctgataaaacgcggtgtcaaacctgatcttgctagttgtcaatccgtggttggtggactatac 12540900  T
Q  106 aaaggtgaaagagttaaggttgctagaaatgtggaagagttgagtttgtcattttccaatctttttcttggaa--cat-attactgaggttaattattat 202  Q
    || |||| || |||||| ||| | |||||  |||||||||||||||||  ||||||   |  |||||| | ||  ||| |||||| ||||||||||||||    
T  12540901 aatggtggaacagttaaagttacaagaaagatggaagagttgagtttgagattttctgtttgttttctggaaaatcattattacttaggttaattattat 12541000  T
Q  203 gattatatttatttcaagtgtgttcttgtttgaccttagcatgcctgataaaaataataatttggtgctagctgtacaatacagaaatagtgatggatgt 302  Q
    |||||||||||||||| ||||||||||| ||||||||||| | |||||||| ||||      |||  |||||||||| |||  ||||||  |||||||      
T  12541001 gattatatttatttcatgtgtgttcttgcttgaccttagctttcctgataataata------tgggtctagctgtaccatattgaaataaggatggatcc 12541094  T
Q  303 tgcaaaggaaggacagaaggagctactt---gcctattgaatattctagattacatgctttctagttttctaatttaaggaccatgcttctgcttttact 399  Q
    | |||||||||||| ||||||||||| |   |||  | ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12541095 ttcaaaggaaggacggaaggagctacgtcctgccggtggaatattgtagattacatgctttctagttttttaatttaaggaccatgcttctgcttttact 12541194  T
Q  400 ttcacttctatagctttgcttccaagtgtgtgtactggaaaataataatgttttaattaatgctattctaatttgatcatgt 481  Q
    |||||||||| | ||||||||||||||||||| |||| ||||||||||||  ||||||||||  ||||||||||| ||||||    
T  12541195 ttcacttctacatctttgcttccaagtgtgtgcactgcaaaataataatg-cttaattaatgtaattctaatttgttcatgt 12541275  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 12532864 - 12532769
Alignment:
Q  25 aaaagagcagcagctgtgctgataaaacgcggtgtcaaacctgatcgtgctggttatcaatccatgaggggtggactgttcaaaggtgaaagagtt 120  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||| ||||| |||| |||||||| |||||||    
T  12532864 aaaagagcagtagctgtgctgataaaacgcggtgtcaaacctaatcttgctagttatcaatccgtgagtggtggcctgtccaaaggtggaagagtt 12532769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 530 - 614
Target Start/End: Original strand, 12541275 - 12541359
Alignment:
Q  530 tgtttcttgttttatattttctcttcaataatgccttatgattgtcttgacttgtgacattttcttcggatggatattactctta 614  Q
    |||||||||||||||||||||||||  || ||||||||| ||||||||| |||||||||||||||| |||||||| |||||||||    
T  12541275 tgtttcttgttttatattttctctttgattatgccttatcattgtcttgccttgtgacattttctttggatggatcttactctta 12541359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 338 - 453
Target Start/End: Complemental strand, 12535092 - 12534973
Alignment:
Q  338 gaatattctagattacatgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttcta----tagctttgcttccaagtgtgtgta 433  Q
    ||||||| |||| ||| |||||||||||||||||||| |||||| ||||||||| |||||||  || |||||    ||  |||||||||||||||||| |    
T  12535092 gaatattgtagactacttgctttctagttttctaattaaaggactatgcttctgtttttactcgcatttctatatgtaagtttgcttccaagtgtgtgca 12534993  T
Q  434 ctggaaaataataatgtttt 453  Q
    || ||||||||  |||||||    
T  12534992 ctagaaaataacgatgtttt 12534973  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 12535311 - 12535197
Alignment:
Q  39 tgtgctgataaaacgcggtgtcaaacctgatcgtgctggttatcaatccatgaggggtggactgttcaaaggtgaaagagttaaggttgctagaaatgtg 138  Q
    ||||||||||||||| |||||| ||||| |||  ||| | ||||||||  ||   |||||||| | |||||||| ||||||||||||||| ||||| |||    
T  12535311 tgtgctgataaaacgtggtgtccaacctcatctcgctagctatcaatctgtggttggtggactatacaaaggtggaagagttaaggttgcaagaaaagtg 12535212  T
Q  139 gaagagttgagtttg 153  Q
    |||||| ||||||||    
T  12535211 gaagagctgagtttg 12535197  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 346 - 397
Target Start/End: Original strand, 47569740 - 47569791
Alignment:
Q  346 tagattacatgctttctagttttctaatttaaggaccatgcttctgctttta 397  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  47569740 tagattacatgctttctagttttctaatttaaggactatgtttttgctttta 47569791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 12538630 - 12538581
Alignment:
Q  38 ctgtgctgataaaacgcggtgtcaaacctgatcgtgctggttatcaatcc 87  Q
    |||||| |||||||||||||||||||||||||| |||| |||||||||||    
T  12538630 ctgtgcagataaaacgcggtgtcaaacctgatcttgctagttatcaatcc 12538581  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 28239767 - 28239831
Alignment:
Q  346 tagattacatgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttctat 410  Q
    |||||||||||||||||||||| |||||||||||||  || || |||||||| || |||||||||    
T  28239767 tagattacatgctttctagtttgctaatttaaggactttgtttttgcttttaattgcacttctat 28239831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 12531979 - 12531936
Alignment:
Q  463 tattctaatttgatcatgtctgcgtatttggcccatatatgttc 506  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||    
T  12531979 tattctaatttgatcgtgtctgcgtatttggccgatatatgttc 12531936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 14508432 - 14508386
Alignment:
Q  350 ttacatgctttctagttttctaatttaaggaccatgcttctgctttt 396  Q
    |||||||||||||| |||||||||| |||||| |||||| |||||||    
T  14508432 ttacatgctttctatttttctaattaaaggactatgcttttgctttt 14508386  T

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Target: chr6 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 384508 - 384373
Alignment:
Q  6 acaagtggtgaaagctgttaaaagagcagcagctgtgctgataaaacgcggtgtcaaacctgatcgtgctggttatcaatccatgaggggtggactgttc 105  Q
    ||||| ||| ||| ||| ||||||||| | |||||||||||| |||||||||||||||||| ||| ||||| || ||| ||  |||  ||||||||||||    
T  384508 acaagaggtcaaatctgctaaaagagccgtagctgtgctgattaaacgcggtgtcaaacctaatcttgctgcttgtcagtctgtgattggtggactgttc 384409  T
Q  106 aaaggtgaaagagttaaggttgctagaaatgtggaa 141  Q
    ||||||| |||||||||| |||| ||||| ||||||    
T  384408 aaaggtggaagagttaagattgcaagaaaggtggaa 384373  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 384193 - 384134
Alignment:
Q  353 catgctttctagttttctaatttaaggaccatgcttctgcttttactttcacttctatag 412  Q
    |||||||||||||||||||||||| | || ||||||||||||||| || |||||||||||    
T  384193 catgctttctagttttctaatttatgcactatgcttctgcttttagttgcacttctatag 384134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 36007987 - 36007875
Alignment:
Q  129 tagaaatgtggaagagttgagtttgtcattttccaatctttttcttggaacat-attactgaggttaattattatgattatatttatttcaagtgtgttc 227  Q
    |||||| ||||||||||||||||||  |||||||  | | ||||| |||| || ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  36007987 tagaaaggtggaagagttgagtttgagattttccgtt-tgtttct-ggaaaatcattactgaggttaattattttgattatatttatttcaagggtgttc 36007890  T
Q  228 ttgtttgaccttagc 242  Q
    ||| |||||||||||    
T  36007889 ttgcttgaccttagc 36007875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 16375795 - 16375837
Alignment:
Q  346 tagattacatgctttctagttttctaatttaaggaccatgctt 388  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||    
T  16375795 tagattacatgctttgtagttttctaattaaaggatcatgctt 16375837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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