View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3211_low_10 (Length: 397)

Name: NF3211_low_10
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3211_low_10
NF3211_low_10
[»] chr6 (19 HSPs)
chr6 (152-378)||(33389189-33389415)
chr6 (152-378)||(31561546-31561769)
chr6 (178-372)||(9167917-9168108)
chr6 (153-378)||(33411073-33411295)
chr6 (178-377)||(33305632-33305828)
chr6 (178-378)||(33272938-33273135)
chr6 (178-378)||(33643339-33643539)
chr6 (179-376)||(33401761-33401955)
chr6 (178-378)||(33058709-33058906)
chr6 (178-378)||(33286688-33286885)
chr6 (178-378)||(33263795-33263992)
chr6 (9-61)||(33389046-33389098)
chr6 (327-378)||(28869508-28869559)
chr6 (15-61)||(9167783-9167829)
chr6 (23-61)||(33058585-33058623)
chr6 (15-61)||(33286553-33286599)
chr6 (23-60)||(33643636-33643673)
chr6 (13-59)||(33410975-33411021)
chr6 (21-61)||(33401631-33401671)
[»] scaffold0428 (1 HSPs)
scaffold0428 (179-374)||(7907-8099)
[»] chr2 (2 HSPs)
chr2 (178-378)||(17439565-17439762)
chr2 (21-61)||(17439856-17439896)
[»] chr4 (13 HSPs)
chr4 (179-378)||(31477708-31477907)
chr4 (178-287)||(31502940-31503049)
chr4 (327-378)||(31502831-31502882)
chr4 (328-378)||(31527696-31527746)
chr4 (327-377)||(31158535-31158585)
chr4 (178-284)||(31497748-31497854)
chr4 (327-378)||(31028967-31029018)
chr4 (178-287)||(31149485-31149594)
chr4 (327-378)||(31149634-31149685)
chr4 (331-378)||(31483565-31483612)
chr4 (15-61)||(31477988-31478034)
chr4 (19-60)||(31483839-31483880)
chr4 (336-370)||(31497668-31497702)


Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 152 - 378
Target Start/End: Original strand, 33389189 - 33389415
Alignment:
Q  152 atgtttctttatttctaaatggtaattttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctcttt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33389189 atgtttctttatttctaaatggtaattttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctcttt 33389288  T
Q  252 gcttgaattttctcgcacaatttttctgcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatg 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33389289 gcttgaattttctcgcacaatttttctgcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatg 33389388  T
Q  352 agaactcttaatccaatatcagcatga 378  Q
    |||||||||||||||||||||||||||    
T  33389389 agaactcttaatccaatatcagcatga 33389415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 152 - 378
Target Start/End: Complemental strand, 31561769 - 31561546
Alignment:
Q  152 atgtttctttatttctaaatggtaattttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctcttt 251  Q
    |||||| |||| |||||||  | || |||||||||||||||||| |||||||||||| |||||  |||||||||| ||||||||||||||||||||||||    
T  31561769 atgtttttttaattctaaacagaaactttaccattttctccatcataacattgtagatttgttcatgggaccacaacctgctccactttctttgctcttt 31561670  T
Q  252 gcttgaattttctcgcacaatttttctgcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatg 351  Q
    ||||||| ||||| ||||||||||||||||||| ||  |||| ||| ||||||||| ||| | |||||   ||| ||||||||||||||||||||||| |    
T  31561669 gcttgaactttcttgcacaatttttctgcctagttcttccaacaaataatgcattttaattattgaat---tatcaatgcttataagtgatttatcaagg 31561573  T
Q  352 agaactcttaatccaatatcagcatga 378  Q
    |||||||||||||||||||||||||||    
T  31561572 agaactcttaatccaatatcagcatga 31561546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 178 - 372
Target Start/End: Original strand, 9167917 - 9168108
Alignment:
Q  178 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 277  Q
    ||||||||  ||||||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  9167917 tttaccatactctccatcgcaacattgtagagttgttttttggaccacaacctgctccattttctttgctctttgcttgaattttcttgcacaatttttc 9168016  T
Q  278 tgcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatgagaactcttaatccaatatca 372  Q
    |||| |||||  | || ||| ||||||||| |||| ||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9168017 tgcccagctcttctaacaaataatgcattttaatctctgaat---aattaatgcttataagtgatttatcaatgagaactcttaatccaatatca 9168108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 153 - 378
Target Start/End: Original strand, 33411073 - 33411295
Alignment:
Q  153 tgtttctttatttctaaatggtaattttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttg 252  Q
    ||||| || |||||||||  || | |||||||| ||||||||| |||| |||||||||||||||| |||||| | |||||||||||||||||||||||||    
T  33411073 tgttttttaatttctaaacagttactttaccatattctccatcataacgttgtagagttgttttttggaccagatcctgctccactttctttgctctttg 33411172  T
Q  253 cttgaattttctcgcacaatttttctgcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatga 352  Q
    |||||||||||| ||||||||||||||||||||||  |||| ||||||||||||| |||   || |||    | ||||||||||||||||||||||||||    
T  33411173 cttgaattttcttgcacaatttttctgcctagctcttccaacaaagaatgcattttaatatttgcatc---ctcaatgcttataagtgatttatcaatga 33411269  T
Q  353 gaactcttaatccaatatcagcatga 378  Q
    |||||| |||||||||||||||||||    
T  33411270 gaactcctaatccaatatcagcatga 33411295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 178 - 377
Target Start/End: Original strand, 33305632 - 33305828
Alignment:
Q  178 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 277  Q
    |||||||| ||||||| | |||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33305632 tttaccatattctccaccataacattgtagagttgctttttggaccagaccctgctccactttctttgctctttgcttgaattttcttgcacaatttttc 33305731  T
Q  278 tgcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatgagaactcttaatccaatatcagcatg 377  Q
    ||||||||||  |||| |||||||| ||||||||   |||||    |||| || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  33305732 tgcctagctcttccaacaaagaatgtatttcaatatgtgaat---aattagtgtttataagtgatttatcattgagaactcttaatccaatatcagcatg 33305828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 178 - 378
Target Start/End: Original strand, 33272938 - 33273135
Alignment:
Q  178 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 277  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  33272938 tttaccattttctccatcgtaacattgttgagttgtttttcggaccacaccctgctccactttcttcgctctttgcttgaattttcttgcacaatttttc 33273037  T
Q  278 tgcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatgagaactcttaatccaatatcagcatg 377  Q
    |||| |||||  |||| ||||||||||||  |||   ||| ||||    || ||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  33273038 tgcccagctcttccaacaaagaatgcattataattgttgactcac---caaggcttataagtgatttatcattgagaacacttaatccaatgtcagcatg 33273134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 178 - 378
Target Start/End: Complemental strand, 33643539 - 33643339
Alignment:
Q  178 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 277  Q
    |||||||| |||||||||  ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||     
T  33643539 tttaccatattctccatcacaacattgtagatttgttttttggaccacagcctgctccactttctttgctctttgcttgaattttcttgcacaatttttt 33643440  T
Q  278 tgcctagctcaaccaataaagaatgcatttcaatcactgaatcact-attaatgcttataagtgatttatcaatgagaactcttaatccaatatcagcat 376  Q
    | ||||||||  | || | |||||||||||||||| || | | | | || |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33643439 ttcctagctcttctaacagagaatgcatttcaatc-ctcattgaataatcaatgcttataagtgatttatcaatgagaactcttaacccaatatcagcat 33643341  T
Q  377 ga 378  Q
    ||    
T  33643340 ga 33643339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 179 - 376
Target Start/End: Original strand, 33401761 - 33401955
Alignment:
Q  179 ttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttct 278  Q
    ||||||| ||||||||| |||||| |||||||||||||   ||||||| ||||||||| |||||| |||||||||||||| ||| | |||||||||||||    
T  33401761 ttaccatattctccatcttaacatcgtagagttgttttgcagaccacaacctgctccattttcttggctctttgcttgaagttttttgcacaatttttct 33401860  T
Q  279 gcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatgagaactcttaatccaatatcagcat 376  Q
    |||||||||   ||| |||||||||||||||||   |   | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33401861 gcctagctctttcaacaaagaatgcatttcaatattt---tgaccattaatgcttataagtgatttatcaatgagaactcttattccaatatcagcat 33401955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 178 - 378
Target Start/End: Original strand, 33058709 - 33058906
Alignment:
Q  178 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 277  Q
    |||||||| ||||||| | |||||| ||||||||||| |  |||||||| ||||||||| |||||| | |||||||||||| | | | ||||||||||||    
T  33058709 tttaccatattctccaacataacatcgtagagttgttctgtggaccacaacctgctccattttcttggttctttgcttgaactattttgcacaatttttc 33058808  T
Q  278 tgcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatgagaactcttaatccaatatcagcatg 377  Q
    ||||||||||  |||| ||||||||||| | ||| | ||||| ||   ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33058809 tgcctagctcttccaacaaagaatgcatgttaataattgaataac---taatgcttacaagtgatttatcaatgagaactcttaatccaatatcagcatg 33058905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 178 - 378
Target Start/End: Original strand, 33286688 - 33286885
Alignment:
Q  178 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 277  Q
    |||||||| ||||||| | |||||||||||||||||| |  |||||||| ||||||||| |||||| |||||||||||||| | | | ||||||||||||    
T  33286688 tttaccatattctccaacataacattgtagagttgttctgtggaccacaacctgctccattttcttggctctttgcttgaactattttgcacaatttttc 33286787  T
Q  278 tgcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatgagaactcttaatccaatatcagcatg 377  Q
    ||||||||||  |||| ||||||||||||||||    |   | || ||||||| | ||||||||||||||||| ||||||||||||||||||||||||||    
T  33286788 tgcctagctcttccaacaaagaatgcatttcaagattt---tgaccattaatgttcataagtgatttatcaataagaactcttaatccaatatcagcatg 33286884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 178 - 378
Target Start/End: Original strand, 33263795 - 33263992
Alignment:
Q  178 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 277  Q
    |||||||| ||||||||| |||||||||||| |||||||  |||||||| ||| ||||| |||||| ||||||||| |||| | | | ||||||||||||    
T  33263795 tttaccatattctccatcttaacattgtagaattgttttgcggaccacaacctactccattttcttggctctttgcatgaactattttgcacaatttttc 33263894  T
Q  278 tgcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatgagaactcttaatccaatatcagcatg 377  Q
     |||||||||   ||| ||||||||||||  |||   |||||   || |||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  33263895 ggcctagctcttgcaacaaagaatgcattataattcttgaat---tactaatgcttataagtgatttagcaatgagaacacttaatccaatatcagcatg 33263991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 33389046 - 33389098
Alignment:
Q  9 acatcatcatcattcaaaactatggcttcaacatgcatttcctaaagcattgc 61  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  33389046 acatcatcatcattcaaaactatggcttcaacatgcctttcctaaagcattgc 33389098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 327 - 378
Target Start/End: Complemental strand, 28869559 - 28869508
Alignment:
Q  327 aatgcttataagtgatttatcaatgagaactcttaatccaatatcagcatga 378  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  28869559 aatgcttataagggatttatcaatgagaacttttaatccaatatcagcatga 28869508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 9167783 - 9167829
Alignment:
Q  15 tcatcattcaaaactatggcttcaacatgcatttcctaaagcattgc 61  Q
    ||||||||||||||||| |||||||||||| |||||||||| |||||    
T  9167783 tcatcattcaaaactattgcttcaacatgcttttcctaaagaattgc 9167829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 33058585 - 33058623
Alignment:
Q  23 caaaactatggcttcaacatgcatttcctaaagcattgc 61  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  33058585 caaaactatggcttcaacatgcttttcctaaagcattgc 33058623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 33286553 - 33286599
Alignment:
Q  15 tcatcattcaaaactatggcttcaacatgcatttcctaaagcattgc 61  Q
    |||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  33286553 tcatcattcaaaactaaggctttaacatgcttttcctaaagcattgc 33286599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 33643673 - 33643636
Alignment:
Q  23 caaaactatggcttcaacatgcatttcctaaagcattg 60  Q
    |||||||||||||||||||||| |||||||||||||||    
T  33643673 caaaactatggcttcaacatgcttttcctaaagcattg 33643636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 33410975 - 33411021
Alignment:
Q  13 catcatcattcaaaactatggcttcaacatgcatttcctaaagcatt 59  Q
    ||||||||||||||| ||||||||||||||||  ||||||| |||||    
T  33410975 catcatcattcaaaaatatggcttcaacatgctcttcctaatgcatt 33411021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 33401631 - 33401671
Alignment:
Q  21 ttcaaaactatggcttcaacatgcatttcctaaagcattgc 61  Q
    ||||||| |||||||||||||| | ||||||||||||||||    
T  33401631 ttcaaaagtatggcttcaacattcttttcctaaagcattgc 33401671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 179 - 374
Target Start/End: Original strand, 7907 - 8099
Alignment:
Q  179 ttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttct 278  Q
    ||||||| |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7907 ttaccatattctccatcgtaacattgtagagttgttgtttggaccacatcctgctccactttctttgctctttgcttgaattttcttgcacaatttttct 8006  T
Q  279 gcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatgagaactcttaatccaatatcagc 374  Q
    ||||| |||  |||| ||||||||||||||||  | |||   || || |||| |||| ||||||||||||||||||||| | ||||||||||||||    
T  8007 gcctaactcttccaacaaagaatgcatttcaacaattga---accatgaatggttattagtgatttatcaatgagaactataaatccaatatcagc 8099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 178 - 378
Target Start/End: Complemental strand, 17439762 - 17439565
Alignment:
Q  178 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 277  Q
    |||||||||||| ||||  ||||||  |||||||||| |   ||||||| ||||||||| |||||| | || ||||||||| | | | ||||||||||||    
T  17439762 tttaccattttcgccataataacatcatagagttgttctgtagaccacaacctgctccattttcttgggtcattgcttgaactattttgcacaatttttc 17439663  T
Q  278 tgcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatgagaactcttaatccaatatcagcatg 377  Q
    |||| |||||  |||| |||||||||||||||||   |   | || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17439662 tgcccagctcttccaacaaagaatgcatttcaatgttt---tgaccattaatgcttataagtgatttattaatgagaactcttaatccaatatcagcatg 17439566  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 17439896 - 17439856
Alignment:
Q  21 ttcaaaactatggcttcaacatgcatttcctaaagcattgc 61  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  17439896 ttcaaaactatggcttcaacatgcttttcctaaagcattgc 17439856  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 179 - 378
Target Start/End: Complemental strand, 31477907 - 31477708
Alignment:
Q  179 ttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttct 278  Q
    ||||||||||||||| | | |||| || || |||||||  | |||| | ||| ||||| ||||||||||||||||||||||||||| | ||||||| |||    
T  31477907 ttaccattttctccaacatgacatcgttgacttgttttacgaaccatatcctcctccagtttctttgctctttgcttgaattttcttgaacaatttctct 31477808  T
Q  279 gcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaatgcttataagtgatttatcaatgagaactcttaatccaatatcagcatga 378  Q
     ||||||||  |||| |||  |||||| | ||| | |  |||   || ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31477807 ccctagctcttccaacaaaccatgcatgtgaataaatccatctgcatcaatgcttataagtgatttatcaatgagaactcttaatccaatatcggcatga 31477708  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 31503049 - 31502940
Alignment:
Q  178 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 277  Q
    |||||||||||||||| | | ||||||| || |||| |||   |||||| |||||||||||||||| |||||||||||||||||||| | ||||||||||    
T  31503049 tttaccattttctccaacatgacattgtcgacttgtgtttctaaccacaacctgctccactttcttggctctttgcttgaattttcttgaacaatttttc 31502950  T
Q  278 tgcctagctc 287  Q
    | ||||||||    
T  31502949 ttcctagctc 31502940  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 378
Target Start/End: Complemental strand, 31502882 - 31502831
Alignment:
Q  327 aatgcttataagtgatttatcaatgagaactcttaatccaatatcagcatga 378  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31502882 aatgcttataagtgatttatcaatgagaactcttaatcctatatcagcatga 31502831  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 31527696 - 31527746
Alignment:
Q  328 atgcttataagtgatttatcaatgagaactcttaatccaatatcagcatga 378  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31527696 atgcttataagtgatttgtcaatgagaactcttaatccaatatcagcatga 31527746  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 31158535 - 31158585
Alignment:
Q  327 aatgcttataagtgatttatcaatgagaactcttaatccaatatcagcatg 377  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  31158535 aatgcttagaagtgatttatcaattagaactcttaatccaatatcagcatg 31158585  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 284
Target Start/End: Complemental strand, 31497854 - 31497748
Alignment:
Q  178 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 277  Q
    |||||||| ||||||| | |||||| ||||| ||||| ||   |||||| ||||||||||||||||  ||| ||||||||||||||| | ||||| ||||    
T  31497854 tttaccatattctccaacataacatcgtagaattgttctttcaaccacaacctgctccactttcttctctccttgcttgaattttcttgaacaatatttc 31497755  T
Q  278 tgcctag 284  Q
    |||||||    
T  31497754 tgcctag 31497748  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 327 - 378
Target Start/End: Original strand, 31028967 - 31029018
Alignment:
Q  327 aatgcttataagtgatttatcaatgagaactcttaatccaatatcagcatga 378  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||||||||||    
T  31028967 aatgcttataagggatttatcaatgagaattcttaatccgatatcagcatga 31029018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 31149485 - 31149594
Alignment:
Q  178 tttaccattttctccatcgtaacattgtagagttgtttttgggaccacaccctgctccactttctttgctctttgcttgaattttctcgcacaatttttc 277  Q
    |||||||| ||||||  | ||||||| |||| ||| || |||  ||||| ||||||||||||||||  ||||||| |||| |||||| | ||||||||||    
T  31149485 tttaccatattctccgacataacattatagaattgcttgtggagccacatcctgctccactttcttgactctttgattgatttttcttgaacaatttttc 31149584  T
Q  278 tgcctagctc 287  Q
    |||| |||||    
T  31149585 tgccaagctc 31149594  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 378
Target Start/End: Original strand, 31149634 - 31149685
Alignment:
Q  327 aatgcttataagtgatttatcaatgagaactcttaatccaatatcagcatga 378  Q
    |||||||||||  ||||||||||| ||||| |||||||||||||||||||||    
T  31149634 aatgcttataacggatttatcaattagaacccttaatccaatatcagcatga 31149685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 331 - 378
Target Start/End: Complemental strand, 31483612 - 31483565
Alignment:
Q  331 cttataagtgatttatcaatgagaactcttaatccaatatcagcatga 378  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||    
T  31483612 cttataagtgatttatcaacaagaactcttaatccaatatcaggatga 31483565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 31478034 - 31477988
Alignment:
Q  15 tcatcattcaaaactatggcttcaacatgcatttcctaaagcattgc 61  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||||    
T  31478034 tcatgattcaaaactatggcttcaacattcttttcctaaagcattgc 31477988  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 31483880 - 31483839
Alignment:
Q  19 cattcaaaactatggcttcaacatgcatttcctaaagcattg 60  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  31483880 cattcaaaactatggcttcaacattcttttcctaaagcattg 31483839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 370
Target Start/End: Complemental strand, 31497702 - 31497668
Alignment:
Q  336 aagtgatttatcaatgagaactcttaatccaatat 370  Q
    |||||||||||||||||||||||||||||| ||||    
T  31497702 aagtgatttatcaatgagaactcttaatccgatat 31497668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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