View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_low_11 (Length: 395)
Name: NF3211_low_11
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 27895932 - 27896308
Alignment:
| Q |
1 |
atgcagtgtatagggcaaagacccaccggtaccgtctattaagtggctacgtataacctagagttcagaaatatcgtgtcctcgttcagcataaatagcc |
100 |
Q |
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| T |
27895932 |
atgcagtgtatagggcaaagacccaccggtaccgtctattaagtggctacgtataacctagagttcagaaatatcgtgtcctcgttcagcataaatagcc |
27896031 |
T |
|
| Q |
101 |
aaacctgcacataaaattatatcccaatctcaattaataatttagatactaccttgttctctaataattaactaataattgtttcaatattcaaaatgct |
200 |
Q |
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| T |
27896032 |
aaacctgcacataaaattatatcccaatctcaattaataatttagatactaccttgttctctaataattaactaataattgtttcaatattcaaaatgct |
27896131 |
T |
|
| Q |
201 |
tgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctacataaatgaagatcatgccacaaccacaagt |
300 |
Q |
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| T |
27896132 |
tgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctacataaatgaagatcatgccacaaccacaagt |
27896231 |
T |
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| Q |
301 |
gatcttgctgatgatgttacgaaaggttactttgctgttcttgcaaagaagggtgtagaaactagaaggtttattgt |
377 |
Q |
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| T |
27896232 |
gatcttgctgatgatgttacgaaaggttactttgctgttcttgcaaagaagggtgtagaaactagaaggtttattgt |
27896308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 185 - 377
Target Start/End: Original strand, 27918223 - 27918418
Alignment:
| Q |
185 |
caatattcaaaatgcttgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctacataaatgaagatca |
284 |
Q |
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| T |
27918223 |
caatattcaagatgcttagttcatttgttgagaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctactggagtgaagatca |
27918322 |
T |
|
| Q |
285 |
tgccacaaccacaagt---gatcttgctgatgatgttacgaaaggttactttgctgttcttgcaaagaagggtgtagaaactagaaggtttattgt |
377 |
Q |
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| T |
27918323 |
tgccacaaccacaggtcacgagcttgctgatgatgttatgaaaggttactttgctgttcttgcaaagaagggtttagaaactagaagatttattgt |
27918418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 156 - 377
Target Start/End: Original strand, 27929757 - 27929972
Alignment:
| Q |
156 |
gttctctaataattaactaataattgtttcaatattcaaaatgcttgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaag |
255 |
Q |
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| T |
27929757 |
gttctctaattaatcactattaactctttcaatattcaagatgcttagttcttttgttggtaaagcacaaaagagtttatcagtctttgtacccagaaag |
27929856 |
T |
|
| Q |
256 |
catgcattgagctacataaatgaagatcatgccacaaccacaagtgatcttgctgatgatgttacgaaaggttactttgctgttcttgcaaagaagggtg |
355 |
Q |
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| T |
27929857 |
catgcattgagctactggaatgaagatcatgccacaac------tggggttgccgatgatgtcatgaaaggttactttgctgttcttgcaaagaagggtg |
27929950 |
T |
|
| Q |
356 |
tagaaactagaaggtttattgt |
377 |
Q |
| |
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| T |
27929951 |
aagaaactagaaggtttattgt |
27929972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 182 - 377
Target Start/End: Original strand, 27923408 - 27923597
Alignment:
| Q |
182 |
tttcaatattcaaaatgcttgattcatttgttgggaaggtacaaaagagtttatcagtctttgtaccaagaaagcatgcattgagctacataaatgaaga |
281 |
Q |
| |
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||||| ||||||| |||||| ||| |||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||||| | |||||| |
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| T |
27923408 |
tttcagtattcaagatgcttagttcttttgttggtaaagtacaaaagagtttatcactctttgtaccgagaaagcatgcattgagctactggagtgaaga |
27923507 |
T |
|
| Q |
282 |
tcatgccacaaccacaagtgatcttgctgatgatgttacgaaaggttactttgctgttcttgcaaagaagggtgtagaaactagaaggtttattgt |
377 |
Q |
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| T |
27923508 |
tcatgccacagc------tggggttgccgatgatgtcatgaaaggttactttgctgttcttgcaaggaagggtgaggaaactagaaggtttattgt |
27923597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 27918129 - 27918220
Alignment:
| Q |
69 |
aaatatcgtgtcctcgttcagcataaatagccaaac-ctgcacataaaattatatcccaatctcaattaataatttagatactaccttgttc |
159 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||| |||| ||||||| |||| ||||||| |||||||||| | ||||||| |||||| |
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| T |
27918129 |
aaatatcgtgttctcgctcagcataaatagccaaactctgctaataaaatcatattccaatcttgattaataattcaaatactacattgttc |
27918220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 27918020 - 27918080
Alignment:
| Q |
19 |
agacccaccggtaccgtctattaagtggctacgtataacctagagttcagaaatatcgtgt |
79 |
Q |
| |
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||||||||| ||||||| |||||| |||||| || |||||||||||| ||||||||||||| |
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| T |
27918020 |
agacccacctgtaccgtatattaactggctatgtgtaacctagagttaagaaatatcgtgt |
27918080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 374
Target Start/End: Original strand, 27956177 - 27956238
Alignment:
| Q |
313 |
gatgttacgaaaggttactttgctgttcttgcaaagaagggtgtagaaactagaaggtttat |
374 |
Q |
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||||||| | |||| |||||||||||| |||||| ||||| || |||||||| ||||||||| |
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| T |
27956177 |
gatgttagggaaggatactttgctgttgttgcaatgaaggatggagaaactaaaaggtttat |
27956238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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