View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_low_12 (Length: 389)
Name: NF3211_low_12
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 2863203 - 2863576
Alignment:
| Q |
1 |
tagcaaatgaatgttattaaattctagagtccacttgttgatttgctttatttgtgtgttacctcctttattcccaccctctaaacatgcgaagcagaaa |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2863203 |
tagcaaatgaatgttattaaattctagagaccacttgttgatttgctttatttgtgtgttgcctcctttattcccaccctctaaacatgcgaagcagaaa |
2863302 |
T |
|
| Q |
101 |
ttaatgtcaatgtggaatattttacataggaaactttcagaacatgttgaaacaaagtctgtgttgcgagatcatatacctatcatcagaaggtttactg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2863303 |
ttaatgtcaatgtggaatattttacataggaaactttcagaacttgttgaaacaaagtctgtgttgcgagatcatatacctatcatcagaaggtttactg |
2863402 |
T |
|
| Q |
201 |
ggggaggaactgttattgttgacaacggcactatatttgtcacactgatatgcaataaagacgctgttccaaatgttcaaccctttccgcgtcccattat |
300 |
Q |
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| T |
2863403 |
ggggaggaactgttattgttgacaacggcactatatttgttacactgatatgcaataaagacgctgttccaaatgttcaaccctttccccgtcccattat |
2863502 |
T |
|
| Q |
301 |
gtcgtggagtggtcaattgtacagtaaagtttttgaagggcttgccgatttccatctccgtgaaaatggtatat |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2863503 |
gtcgtggagtggtcaattgtacagtaaagtttttgaagggcttgccgatttccatctccgtgaaaatggtatat |
2863576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 50320370 - 50320740
Alignment:
| Q |
1 |
tagcaaatgaatgttattaaattctagagtccacttgttgatttgctttatttgtgtgttacctcctttattcccaccctctaaacatgcgaagcagaaa |
100 |
Q |
| |
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|||||||||||||||| |||||| || ||||||||||||||||||||||| |||| | ||||||| |||||| | |||| |||||| |||| || | |
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| T |
50320370 |
tagcaaatgaatgttac---attctacaggccacttgttgatttgctttatttatgtgatgcctccttcattccctcgctctgaacatgggaagtaggat |
50320466 |
T |
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| Q |
101 |
ttaatgtcaatgtggaatattttacataggaaactttcagaacatgttgaaacaaagtctgtgttgcgagatcatatacctatcatcagaaggtttactg |
200 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50320467 |
ttgatgtcaatgtgaaatattttacataggaaactttcagaacttgttgaagtcaagtctgtgttgcgagatcatatacctatcatcagaaggtttactg |
50320566 |
T |
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| Q |
201 |
ggggaggaactgttattgttgacaacggcactatatttgtcacactgatatgcaataaagacgctgttccaaatgttcaaccctttccgcgtcccattat |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
50320567 |
ggggaggaactgttattgttgacaacggcactatctttattacactgatatgcaataaagacgctgttccaaatgttcaaccctttccccgtccaattat |
50320666 |
T |
|
| Q |
301 |
gtcgtggagtggtcaattgtacagtaaagtttttgaagggcttgccgatttccatctccgtgaaaatggtatat |
374 |
Q |
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||| ||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50320667 |
gtcatggagtggtcaattgtatggtagagtttttgaagggcttgctgatttccatctccgtgaaaatggtatat |
50320740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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