View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3211_low_15 (Length: 370)

Name: NF3211_low_15
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3211_low_15
NF3211_low_15
[»] chr3 (25 HSPs)
chr3 (77-352)||(49865796-49866064)
chr3 (11-77)||(16031259-16031325)
chr3 (11-76)||(13105639-13105704)
chr3 (11-76)||(13111787-13111852)
chr3 (11-76)||(14893146-14893211)
chr3 (11-76)||(21638561-21638626)
chr3 (12-76)||(4313596-4313660)
chr3 (11-78)||(14888041-14888108)
chr3 (14-76)||(261364-261426)
chr3 (11-76)||(14881315-14881380)
chr3 (11-76)||(23288122-23288187)
chr3 (11-76)||(11180760-11180825)
chr3 (15-76)||(48060734-48060795)
chr3 (14-76)||(68145-68207)
chr3 (14-76)||(74238-74300)
chr3 (11-76)||(30102452-30102517)
chr3 (11-75)||(12550412-12550476)
chr3 (17-76)||(49967354-49967413)
chr3 (11-76)||(3404752-3404817)
chr3 (11-76)||(8612622-8612687)
chr3 (11-77)||(8606161-8606227)
chr3 (18-74)||(37470141-37470197)
chr3 (11-76)||(13509414-13509479)
chr3 (14-76)||(30068681-30068743)
chr3 (263-346)||(49872107-49872191)
[»] chr6 (14 HSPs)
chr6 (11-78)||(12667538-12667605)
chr6 (11-76)||(18960997-18961062)
chr6 (11-76)||(28702888-28702953)
chr6 (11-77)||(19713679-19713745)
chr6 (11-76)||(20452658-20452723)
chr6 (11-77)||(14176923-14176988)
chr6 (11-77)||(20459459-20459525)
chr6 (11-76)||(19719836-19719901)
chr6 (11-76)||(19898950-19899015)
chr6 (11-76)||(22779140-22779205)
chr6 (11-78)||(17784071-17784138)
chr6 (20-76)||(26896467-26896523)
chr6 (11-72)||(10985075-10985136)
chr6 (37-78)||(24150082-24150123)
[»] scaffold0290 (1 HSPs)
scaffold0290 (11-77)||(22045-22111)
[»] scaffold0167 (1 HSPs)
scaffold0167 (11-77)||(7979-8045)
[»] scaffold0027 (1 HSPs)
scaffold0027 (11-77)||(23582-23648)
[»] chr5 (13 HSPs)
chr5 (11-77)||(36448248-36448314)
chr5 (11-76)||(20092753-20092818)
chr5 (11-77)||(23378301-23378367)
chr5 (11-76)||(20099650-20099715)
chr5 (11-76)||(20639863-20639928)
chr5 (11-74)||(26186649-26186712)
chr5 (11-77)||(15956982-15957048)
chr5 (11-76)||(25526188-25526253)
chr5 (11-76)||(25532868-25532933)
chr5 (11-76)||(36454627-36454692)
chr5 (11-76)||(37048344-37048409)
chr5 (11-76)||(40014876-40014941)
chr5 (11-77)||(25042281-25042347)
[»] chr4 (12 HSPs)
chr4 (11-77)||(20548380-20548446)
chr4 (11-76)||(19738009-19738074)
chr4 (11-76)||(20555005-20555070)
chr4 (11-77)||(50187782-50187848)
chr4 (11-76)||(3382445-3382510)
chr4 (20-78)||(39745430-39745488)
chr4 (14-76)||(3389196-3389258)
chr4 (18-76)||(22175845-22175903)
chr4 (11-77)||(25984368-25984434)
chr4 (11-76)||(14924997-14925062)
chr4 (19-76)||(39534175-39534232)
chr4 (33-78)||(55793251-55793296)
[»] chr2 (10 HSPs)
chr2 (11-77)||(20279332-20279398)
chr2 (11-77)||(11873681-11873747)
chr2 (11-77)||(38084468-38084534)
chr2 (11-76)||(18289-18354)
chr2 (11-76)||(18500226-18500291)
chr2 (11-77)||(36735332-36735398)
chr2 (11-77)||(5874252-5874318)
chr2 (11-76)||(5871111-5871176)
chr2 (11-54)||(29586096-29586139)
chr2 (19-77)||(12370462-12370520)
[»] scaffold0001 (1 HSPs)
scaffold0001 (11-76)||(96782-96847)
[»] chr8 (13 HSPs)
chr8 (11-76)||(14891862-14891927)
chr8 (11-78)||(22162987-22163054)
chr8 (11-77)||(15061336-15061402)
chr8 (11-77)||(25859275-25859341)
chr8 (11-76)||(20733160-20733225)
chr8 (11-76)||(22156978-22157043)
chr8 (11-77)||(32025654-32025720)
chr8 (11-76)||(20725198-20725263)
chr8 (11-76)||(20738096-20738161)
chr8 (12-56)||(25853031-25853075)
chr8 (11-78)||(31999761-31999828)
chr8 (26-77)||(24487931-24487982)
chr8 (14-76)||(32006734-32006795)
[»] chr7 (10 HSPs)
chr7 (11-76)||(34132822-34132887)
chr7 (11-77)||(22346866-22346932)
chr7 (11-77)||(34139134-34139200)
chr7 (11-74)||(43906101-43906164)
chr7 (11-77)||(1858567-1858633)
chr7 (11-77)||(28415149-28415215)
chr7 (11-76)||(18779065-18779130)
chr7 (11-65)||(13270887-13270941)
chr7 (12-76)||(6852014-6852078)
chr7 (38-82)||(15683146-15683190)
[»] chr1 (14 HSPs)
chr1 (11-76)||(19367475-19367540)
chr1 (11-76)||(35070035-35070100)
chr1 (11-77)||(20429352-20429418)
chr1 (11-76)||(1961638-1961703)
chr1 (11-76)||(18098375-18098440)
chr1 (11-76)||(22116351-22116416)
chr1 (11-65)||(1955829-1955883)
chr1 (26-76)||(2336072-2336122)
chr1 (11-77)||(44832556-44832622)
chr1 (11-77)||(47108372-47108438)
chr1 (33-77)||(16884517-16884561)
chr1 (19-77)||(39454380-39454438)
chr1 (11-76)||(13450035-13450100)
chr1 (38-78)||(22840176-22840216)
[»] scaffold1922 (1 HSPs)
scaffold1922 (11-78)||(216-283)
[»] scaffold0150 (1 HSPs)
scaffold0150 (11-78)||(38599-38666)
[»] scaffold0351 (1 HSPs)
scaffold0351 (11-77)||(7641-7707)
[»] scaffold0085 (1 HSPs)
scaffold0085 (11-77)||(7799-7865)
[»] scaffold0046 (1 HSPs)
scaffold0046 (11-77)||(86697-86763)
[»] scaffold0016 (1 HSPs)
scaffold0016 (11-77)||(14098-14164)
[»] scaffold0473 (1 HSPs)
scaffold0473 (11-76)||(9163-9228)
[»] scaffold0320 (1 HSPs)
scaffold0320 (11-76)||(6321-6386)
[»] scaffold0050 (1 HSPs)
scaffold0050 (11-76)||(27716-27781)
[»] scaffold0028 (1 HSPs)
scaffold0028 (11-76)||(65838-65903)
[»] scaffold0253 (2 HSPs)
scaffold0253 (11-76)||(10339-10404)
scaffold0253 (11-76)||(19764-19829)
[»] scaffold0039 (1 HSPs)
scaffold0039 (11-74)||(89874-89937)
[»] scaffold0630 (1 HSPs)
scaffold0630 (11-65)||(1378-1432)
[»] scaffold0328 (1 HSPs)
scaffold0328 (11-77)||(177-243)
[»] scaffold0306 (1 HSPs)
scaffold0306 (14-76)||(15644-15706)
[»] scaffold0029 (1 HSPs)
scaffold0029 (26-76)||(38088-38138)
[»] scaffold0441 (1 HSPs)
scaffold0441 (19-77)||(2470-2528)
[»] scaffold0458 (1 HSPs)
scaffold0458 (19-77)||(9280-9338)
[»] scaffold0094 (1 HSPs)
scaffold0094 (11-76)||(30700-30765)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 77 - 352
Target Start/End: Original strand, 49865796 - 49866064
Alignment:
Q  77 aggggctagttgaagcaagcttatagcttataggtatagcataaactatttttagaagttaactctaagaactcacacaagttatggtaccataaatgtt 176  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49865796 aggggctagttaaagcaagcttagagcttataggtatagcataaactatttttagaagttaactctaagcactcacacaagttatggtaccataaatgtt 49865895  T
Q  177 tgacccctgtttggttcagacttcagaggacgcagaagactattttgttacatcacgttctaatgcacttacaatgaaagaagctctattgctccttcaa 276  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49865896 tgacccctgtttggttca-------gaggacgcagaagactattttgttacatcacgttctaatgcacttacaatgaaagaagctctattgctccttcaa 49865988  T
Q  277 tcaaaacaggtttgcatttggtgaaaacttatacaaacagcctgctaatcacctggttcaatctgagtgcttatct 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49865989 tcaaaacaggtttgcatttggtgaaaacttatacaaacagcctgctaatcacctggttcaatctgagtgcttatct 49866064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 16031259 - 16031325
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  16031259 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 16031325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 13105639 - 13105704
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  13105639 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattagggtatgaca 13105704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 13111787 - 13111852
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  13111787 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 13111852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 14893146 - 14893211
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  14893146 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 14893211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 21638561 - 21638626
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  21638561 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 21638626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 4313596 - 4313660
Alignment:
Q  12 agagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  4313596 agagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 4313660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 14888041 - 14888108
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaag 78  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  14888041 cagagatcgatcagagtcaagtgacatgtgtcagtggagccttaggtcaaaaattggggtatgacaag 14888108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 261426 - 261364
Alignment:
Q  14 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  261426 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 261364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 14881315 - 14881380
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||    
T  14881315 cagagatcgatcagagtcaagtgacatgtgtcggtggggccttaggtcaaaaattggggtatgaca 14881380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 23288122 - 23288187
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  23288122 cagagatcgatcagagtcaagtgacatgtgtaagtggggccttaggtcaaaaattggggtatgaca 23288187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 11180825 - 11180760
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||||    
T  11180825 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggttaaaaattggggtatgaca 11180760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 48060734 - 48060795
Alignment:
Q  15 gatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  48060734 gatcgatcagagtcaagtgacatgtgtcagtgaggccttaggtcaaaaattggggtatgaca 48060795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 68207 - 68145
Alignment:
Q  14 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||    
T  68207 agatcgatcagagtcaagtgacatgtgccagtggggcgttaggtcaaaaattggggtatgaca 68145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 74300 - 74238
Alignment:
Q  14 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||    
T  74300 agatcgatcagagtcaagtgacatgtgccagtggggcgttaggtcaaaaattggggtatgaca 74238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 30102452 - 30102517
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| || |||||||    
T  30102452 cagagatcgatcagagtcaagtgacatgtatcagtggggccttaagtcaaaaattgggatatgaca 30102517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 12550476 - 12550412
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgac 75  Q
    |||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||| |||||||||    
T  12550476 cagagatcgatcggagtcgagtgacatgtgtcactggggccttaggtcaaaaattggggtatgac 12550412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 49967413 - 49967354
Alignment:
Q  17 tcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  49967413 tcgatcagggtcaagtgacacgtgtcagtggggccttaggtcaaaaattagggtatgaca 49967354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 3404817 - 3404752
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||| |||||| | |||||||||||||||||||||||||| | ||||| ||||||||||    
T  3404817 cagagatcgattagagtcgaatgacatgtgtcagtggggccttaggtaaaaaattggggtatgaca 3404752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 8612687 - 8612622
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||| |||||||||| ||||||||  ||||||||| ||||| ||||||||||    
T  8612687 cagagatcgatcagagtcgagtgacatgtctcagtgggctcttaggtcaaaaattggggtatgaca 8612622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 8606227 - 8606161
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||| |||||| |||||||||| ||||||||  ||||||||| ||||| |||||||||||    
T  8606227 cagagatcgattagagtcgagtgacatgtttcagtgggctcttaggtcaaaaattggggtatgacaa 8606161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 37470197 - 37470141
Alignment:
Q  18 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatga 74  Q
    ||||||| ||||||||||| |||| ||||||||||||||||| ||||| ||||||||    
T  37470197 cgatcagggtcaagtgacacgtgttagtggggccttaggtcaaaaattggggtatga 37470141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 13509414 - 13509479
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||| ||||  | ||||||||| |||||||||| || || ||||||||||    
T  13509414 cagagatcgatcagagtcaaatgacgcgcgtcagtgggaccttaggtcaaaatttagggtatgaca 13509479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 30068681 - 30068743
Alignment:
Q  14 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||  |  |||||||| |||||||||| || || ||||||||||    
T  30068681 agatcgatcagagtcaagtgacgcgcatcagtgggaccttaggtcaaaatttagggtatgaca 30068743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 346
Target Start/End: Original strand, 49872107 - 49872191
Alignment:
Q  263 tattgctccttcaat-caaaacaggtttgcatttggtgaaaacttatacaaacagcctgctaatcacctggttcaatctgagtgc 346  Q
    ||||||||||||||| ||| | |||||||||||  ||||||  |||||| ||||| | |||||||| ||||| || |||||||||    
T  49872107 tattgctccttcaatacaacataggtttgcattcagtgaaattttatacgaacagacagctaatcaactggtccactctgagtgc 49872191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 12667538 - 12667605
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaag 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  12667538 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaag 12667605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 18960997 - 18961062
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  18960997 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 18961062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 28702888 - 28702953
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  28702888 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 28702953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 19713745 - 19713679
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  19713745 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 19713679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 20452658 - 20452723
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||    
T  20452658 cagagatcgatcagagtcaagtgacatgtgtcagtggagccttaggtcaaaaattggggtatgaca 20452723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 14176988 - 14176923
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  14176988 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtca-aaaattgggtatgacaa 14176923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 20459459 - 20459525
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  20459459 cagagatcaatcagagtcaagtgacatgtgtcactggggccttaggtcaaaaattggggtatgacaa 20459525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 19719901 - 19719836
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  19719901 cagagatcaatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 19719836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 19899015 - 19898950
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||    
T  19899015 cagagatcaatcagagtcgagtgacatgtgccagtggggccttaggtcaaaaatttgggtatgaca 19898950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 22779140 - 22779205
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||||||||    
T  22779140 cagagatcgatcagagtcaagtgacacgtgtcagtggggcattaggtcaaaaattggggtatgaca 22779205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 17784071 - 17784138
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaag 78  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| | ||||||||||    
T  17784071 cagagatcgatcagagtcgagtgacatgtgtcagtggagccttaggtcaaaaattggtgtatgacaag 17784138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 26896523 - 26896467
Alignment:
Q  20 atcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26896523 atcagagttaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 26896467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 10985075 - 10985136
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtat 72  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||    
T  10985075 cagagatggatcagagtcaagtgacatgtgttagtggggtcttaggtcaaaaattggggtat 10985136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 24150082 - 24150123
Alignment:
Q  37 tgtgtcagtggggccttaggtcagaaatttgggtatgacaag 78  Q
    |||||||||||| |||||||||| ||||| ||||||||||||    
T  24150082 tgtgtcagtgggaccttaggtcaaaaattggggtatgacaag 24150123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 22111 - 22045
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  22111 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 22045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 8045 - 7979
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  8045 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 7979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 23648 - 23582
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  23648 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 23582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 36448314 - 36448248
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  36448314 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 36448248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 20092753 - 20092818
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  20092753 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 20092818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 23378301 - 23378367
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  23378301 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgaggtatgacaa 23378367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 20099650 - 20099715
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  20099650 cagagatcgatcagagtcaagtgacatgtgttagtggggccttaggtcaaaaattggggtatgaca 20099715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 20639863 - 20639928
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  20639863 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 20639928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 26186649 - 26186712
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatga 74  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||    
T  26186649 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatga 26186712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 15956982 - 15957048
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||| ||||| |||||||||||    
T  15956982 cagagatcgatcagagtcaagtgacatgtgtcagtggaaccttaggtcaaaaattggggtatgacaa 15957048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 25526253 - 25526188
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  25526253 cagagatcgatcagattcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 25526188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 25532933 - 25532868
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |||||||    
T  25532933 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattgggatatgaca 25532868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 36454692 - 36454627
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| ||||||||||    
T  36454692 cagagatcgatcagagtcaagtgacatgtgtccgtgaggccttaggtcaaaaattggggtatgaca 36454627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 37048409 - 37048344
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||| ||||||||||||||||    
T  37048409 cagagatcgatcagagtcaagtgacacgtgtcagtgggatcttaggtcaaaaatttgggtatgaca 37048344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 40014941 - 40014876
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||    
T  40014941 cagagatcgatcagagtcaagtgacatgtgtcagtgggaccttaagtcaaaaattggggtatgaca 40014876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 25042281 - 25042347
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||| ||||||||||||||| || ||||||| ||||||||||| |||||||||||| ||||    
T  25042281 cagagatcgaacagagtcaagtgacacgtatcagtggagccttaggtcaaaaatttgggtataacaa 25042347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 20548446 - 20548380
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  20548446 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 20548380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 19738009 - 19738074
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  19738009 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 19738074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 20555070 - 20555005
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  20555070 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 20555005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 50187848 - 50187782
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  50187848 cagagattgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 50187782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 3382445 - 3382510
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  3382445 cagagatcgagcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 3382510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 39745430 - 39745488
Alignment:
Q  20 atcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaag 78  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  39745430 atcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaag 39745488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 3389196 - 3389258
Alignment:
Q  14 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||  || |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  3389196 agatcgatcagtatcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 3389258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 22175845 - 22175903
Alignment:
Q  18 cgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  22175845 cgatcagggtcaagtgacacgtgtcagtggggccttaggtcaaaaattggggtatgaca 22175903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 25984434 - 25984368
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||| ||||| |||||  |||| ||||||||||| |||||||| | ||||| |||||||||||    
T  25984434 cagagatcaatcagcgtcaaacgacacgtgtcagtgggaccttaggttaaaaattggggtatgacaa 25984368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 14925062 - 14924997
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||| |||||| || ||| |||| ||||||||||| |||||||| | ||||| ||||||||||    
T  14925062 cagagattgatcagggttaagcgacacgtgtcagtgggaccttaggtaaaaaattggggtatgaca 14924997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 39534232 - 39534175
Alignment:
Q  19 gatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||| ||||| |||||||||||  ||| ||||| ||||| ||||||||||    
T  39534232 gatcagagtcaaatgacacgtgtcagtgggatcttgggtcaaaaattggggtatgaca 39534175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 55793251 - 55793296
Alignment:
Q  33 gacatgtgtcagtggggccttaggtcagaaatttgggtatgacaag 78  Q
    |||| ||||||||||| |||||||||| ||||| ||||||||||||    
T  55793251 gacaagtgtcagtgggaccttaggtcaaaaattggggtatgacaag 55793296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 20279332 - 20279398
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  20279332 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 20279398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 11873747 - 11873681
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  11873747 cagagatcgatcagagtcaagtgacatgtgtcagtggggtcttaggtcaaaaattggggtatgacaa 11873681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 38084468 - 38084534
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  38084468 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 38084534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 18289 - 18354
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  18289 cagagatcgatcagagtcaagtgacatgtctcagtggggccttaggtcaaaaattggggtatgaca 18354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 18500291 - 18500226
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  18500291 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttagatcaaaaattggggtatgaca 18500226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 36735398 - 36735332
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  36735398 cagagatggatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 36735332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 5874252 - 5874318
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||||||||||| ||||||||||||||||||  |||||||||| ||||| |||||||||||    
T  5874252 cagagatcgatcagagtcgagtgacatgtgtcagtggacccttaggtcaaaaattggggtatgacaa 5874318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 5871111 - 5871176
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||| ||||||||||    
T  5871111 cagagatcgatcagagtcgagtgatatgtgtcagtgggcccttaggtcaaaaattggggtatgaca 5871176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 29586139 - 29586096
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggcctta 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29586139 cagagatcgatcagagtcaagtgacatgtgtcagtggggcctta 29586096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 12370462 - 12370520
Alignment:
Q  19 gatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||||| ||||| |||||||||||  ||| ||||| ||||| |||||||||||    
T  12370462 gatcagagtcaaatgacacgtgtcagtgggatcttgggtcaaaaattggggtatgacaa 12370520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 96847 - 96782
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  96847 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 96782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 14891862 - 14891927
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  14891862 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 14891927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 22162987 - 22163054
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaag 78  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||    
T  22162987 cagagatcgatcagagtcaagtgacatgtgtcagtgggcccttaggtcaaaaattggggtatgacaag 22163054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 15061336 - 15061402
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  15061336 cagagatcgatcagagttaagtgacacgtgtcagtggggccttaggtcaaaaattggggtatgacaa 15061402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 25859275 - 25859341
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  25859275 cagagatcgatcagagtcgagtgacatgtgacagtggggccttaggtcaaaaattggggtatgacaa 25859341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 20733225 - 20733160
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||||    
T  20733225 cagagatcgatcagagtcaagtgacacgtgtcaatggggccttaggtcaaaaattggggtatgaca 20733160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 22156978 - 22157043
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||    
T  22156978 cagagatcgatcagagtcaagtgacatgtgttagtgggcccttaggtcaaaaattggggtatgaca 22157043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 32025654 - 32025720
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||| || |||||||||||||||||||| ||||||||| ||||| |||||||||||    
T  32025654 cagagatcgatcagaatcgagtgacatgtgtcagtggggtcttaggtcaaaaattggggtatgacaa 32025720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 20725263 - 20725198
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||||| | ||||||||||||||||    
T  20725263 cagagatcgatcagagtcaagtgacacgtgttagtcgggccttaggtaaaaaatttgggtatgaca 20725198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 20738161 - 20738096
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||||| | ||||||||||||||||    
T  20738161 cagagatcgatcagagtcaagtgacacgtgttagtcgggccttaggtaaaaaatttgggtatgaca 20738096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 25853031 - 25853075
Alignment:
Q  12 agagatcgatcagagtcaagtgacatgtgtcagtggggccttagg 56  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    
T  25853031 agagatcgatcagagtcgagtgacatgtgtcagtggggccgtagg 25853075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 31999828 - 31999761
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaag 78  Q
    |||||||||||||||||| ||| ||||||||||  |||  ||||||||| ||||| ||||||||||||    
T  31999828 cagagatcgatcagagtcgagttacatgtgtcaacgggatcttaggtcaaaaattggggtatgacaag 31999761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 24487931 - 24487982
Alignment:
Q  26 gtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||| ||||||| ||||||||| |||||||||| ||||| |||||||||||    
T  24487931 gtcaaatgacatgcgtcagtgggaccttaggtcaaaaattggggtatgacaa 24487982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 32006795 - 32006734
Alignment:
Q  14 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||| ||||| |||||||||  ||| ||||||||| ||||| ||||||||||    
T  32006795 agatcgatcagagtcgagtgatatgtgtcag-cgggtcttaggtcaaaaattggggtatgaca 32006734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 34132822 - 34132887
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  34132822 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 34132887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 22346932 - 22346866
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  22346932 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggacaaaaattggggtatgacaa 22346866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 34139134 - 34139200
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||    
T  34139134 cagagatcgatcagagtcaagtgacatgtgtcagtggagccttagatcaaaaattggggtatgacaa 34139200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 43906164 - 43906101
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatga 74  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  43906164 cagagatcgatcaggatcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatga 43906101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 1858567 - 1858633
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  1858567 cagagattgatcatagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaa 1858633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 28415215 - 28415149
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||| | ||||| |||||||||||    
T  28415215 cagagatcgatcagagtcgagtgacatgtgtcagcggggccttaggtaaaaaattggggtatgacaa 28415149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 18779065 - 18779130
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  18779065 cagagatcgattagagtcgagtgacatgtgtcagcggggccttaggtcaaaaattggggtatgaca 18779130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 13270887 - 13270941
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatt 65  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||| |||||    
T  13270887 cagagatcgatcagactcgagtgacatgtgtcagtggggccttaggtcaaaaatt 13270941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 6852014 - 6852078
Alignment:
Q  12 agagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||| || | |||||||||||||| |||||||| | ||||| ||||||||||    
T  6852014 agagatcgatcagagtcgagcggcatgtgtcagtgggaccttaggttaaaaattggggtatgaca 6852078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 15683190 - 15683146
Alignment:
Q  38 gtgtcagtggggccttaggtcagaaatttgggtatgacaaggggc 82  Q
    ||||||||||| |||||||||| ||||| |||||||||| |||||    
T  15683190 gtgtcagtgggaccttaggtcaaaaattggggtatgacagggggc 15683146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 19367540 - 19367475
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  19367540 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 19367475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 35070100 - 35070035
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  35070100 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 35070035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 20429418 - 20429352
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| |||||||||||    
T  20429418 cagagatcgatcagagtcaagtgacaagtgtcagtgggaccttaggtcaaaaattggggtatgacaa 20429352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 1961703 - 1961638
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| ||||| ||||||||||    
T  1961703 cagagatcgatcagagtcaagtgttatgtgtcagtggggccttaggtcaaaaattggggtatgaca 1961638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 18098440 - 18098375
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||    
T  18098440 cagagatcgatcagagtcaagtgacatgtgttagtggggccttaggttaaaaattggggtatgaca 18098375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 22116351 - 22116416
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  22116351 cagagatcgatcagagttgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 22116416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 1955883 - 1955829
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatt 65  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||| |||||    
T  1955883 cagagatcgatcagagtcaagtgatacgtgtcagtggggccttaggtcaaaaatt 1955829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 2336072 - 2336122
Alignment:
Q  26 gtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  2336072 gtcaagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 2336122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 44832556 - 44832622
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| | ||||| || ||||||||    
T  44832556 cagagatcgatcagagtcaagtgacatgtgtcagtgaagccttaggttaaaaattgggatatgacaa 44832622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 47108438 - 47108372
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| | ||||| || ||||||||    
T  47108438 cagagatcgatcagagtcaagtgacatgtgtaagtgggaccttaggttaaaaattaggatatgacaa 47108372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 16884561 - 16884517
Alignment:
Q  33 gacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||| |||||||||||||||||||||| ||||| |||||||||||    
T  16884561 gacacgtgtcagtggggccttaggtcaaaaattggggtatgacaa 16884517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 39454438 - 39454380
Alignment:
Q  19 gatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||| ||||| ||||||| ||||||| | |||||||||| ||||| |||||||||||    
T  39454438 gatcagggtcaaatgacatgcgtcagtgtgaccttaggtcaaaaattggggtatgacaa 39454380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 13450100 - 13450035
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||| ||||||| ||||  | ||||||||| |||||||||| || || ||||||||||    
T  13450100 cagagatcgatccgagtcaaatgacgcgcgtcagtgggaccttaggtcaaaatttagggtatgaca 13450035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 22840176 - 22840216
Alignment:
Q  38 gtgtcagtggggccttaggtcagaaatttgggtatgacaag 78  Q
    ||||||||||| |||||||||| ||||| ||||||||||||    
T  22840176 gtgtcagtgggaccttaggtcaaaaattggggtatgacaag 22840216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1922 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold1922
Description:

Target: scaffold1922; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 216 - 283
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaag 78  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  216 cagagatcgatcagagtcaagtgacatgtgtcagtggggcattaggtcaaaaattggggtatgacaag 283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 38599 - 38666
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaag 78  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  38599 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgacaag 38666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 7641 - 7707
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  7641 cagagatcgatcagagtcaagtgacaagtgtcagtggggccttaggtcaaaaattagggtatgacaa 7707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 7799 - 7865
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  7799 cagagatcgatcagagtcaagtgacatgtgttagtggggccttaggtcaaaaattggggtatgacaa 7865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 86697 - 86763
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  86697 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattagggtatgacaa 86763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 14164 - 14098
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||    
T  14164 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcaaaaattgaggtatgacaa 14098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0473 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0473
Description:

Target: scaffold0473; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 9163 - 9228
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  9163 cagagatcgatcagagtcaagtgacatgtgtcagtgaggccttaggtcaaaaattggggtatgaca 9228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 6321 - 6386
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  6321 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggacaaaaattggggtatgaca 6386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 27716 - 27781
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  27716 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaattggggtatgaca 27781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 65903 - 65838
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  65903 cagagatcgatcagagtcaagtgacatgtgtgagtggggccttaggtcaaaaattggggtatgaca 65838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 10404 - 10339
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  10404 cagagatcgatcagagtcgagtgacatgtgtcagcggggccttaggtcaaaaattggggtatgaca 10339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 19829 - 19764
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  19829 cagagatcgatcagagtcgagtgacatgtgtcagcggggccttaggtcaaaaattggggtatgaca 19764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 89874 - 89937
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatga 74  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  89874 cagagatcgataagagtcaagtgacatatgtcagtggggccttaggtcaaaaattggggtatga 89937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 1378 - 1432
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatt 65  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  1378 cagagatcgatcagagtcgagtgacatgtgtcagtggggccttaggtcaaaaatt 1432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 177 - 243
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||||||||||||||| ||||||| ||||||||| |||||||||||| ||||| |||||||||||    
T  177 cagagatcgatcagagtcgagtgacaagtgtcagtgaggccttaggtcaaaaattggggtatgacaa 243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 15706 - 15644
Alignment:
Q  14 agatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||||||||||||||||||||||||||||||||||  || ||||| ||||||||||    
T  15706 agatcgatcagagtcaagtgacatgtgtcagtggggccttagaacaaaaattggggtatgaca 15644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 38088 - 38138
Alignment:
Q  26 gtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  38088 gtcaagtgacacgtgtcagtggggccttaggtcaaaaattggggtatgaca 38138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 2528 - 2470
Alignment:
Q  19 gatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||| ||||| ||||||| ||||||||| |||||||||| ||||| |||||||||||    
T  2528 gatcagggtcaaatgacatgcgtcagtgggaccttaggtcaaaaattggggtatgacaa 2470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 9280 - 9338
Alignment:
Q  19 gatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgacaa 77  Q
    |||||| ||||| ||||||| ||||||| | |||||||||| ||||| |||||||||||    
T  9280 gatcagggtcaaatgacatgcgtcagtgtgaccttaggtcaaaaattggggtatgacaa 9338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 30700 - 30765
Alignment:
Q  11 cagagatcgatcagagtcaagtgacatgtgtcagtggggccttaggtcagaaatttgggtatgaca 76  Q
    ||||||| ||| || || ||| |||| ||||||||||| |||||||||| ||||| ||||||||||    
T  30700 cagagattgattagggttaagcgacacgtgtcagtgggaccttaggtcaaaaattggggtatgaca 30765  T

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