View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3211_low_18 (Length: 319)

Name: NF3211_low_18
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3211_low_18
NF3211_low_18
[»] chr8 (22 HSPs)
chr8 (1-311)||(22880736-22881046)
chr8 (52-283)||(25469702-25469933)
chr8 (38-264)||(24917197-24917423)
chr8 (52-267)||(25688087-25688302)
chr8 (34-268)||(25599125-25599359)
chr8 (52-283)||(25330925-25331156)
chr8 (52-283)||(25710710-25710941)
chr8 (52-268)||(25738034-25738250)
chr8 (38-234)||(24890483-24890679)
chr8 (38-234)||(25500933-25501129)
chr8 (52-268)||(25730548-25730764)
chr8 (52-148)||(25407750-25407846)
chr8 (38-234)||(25428194-25428390)
chr8 (52-149)||(25379679-25379776)
chr8 (34-265)||(25485752-25485983)
chr8 (38-234)||(25825620-25825816)
chr8 (184-234)||(23261869-23261919)
chr8 (49-159)||(25687126-25687236)
chr8 (178-279)||(25635163-25635264)
chr8 (195-283)||(25419805-25419893)
chr8 (195-268)||(25379560-25379633)
chr8 (195-268)||(25407630-25407703)
[»] chr1 (1 HSPs)
chr1 (39-268)||(23394421-23394650)
[»] scaffold0070 (2 HSPs)
scaffold0070 (38-92)||(41349-41403)
scaffold0070 (52-148)||(25671-25767)
[»] chr4 (1 HSPs)
chr4 (64-92)||(10332023-10332051)


Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 22880736 - 22881046
Alignment:
Q  1 ttgcgctggttaaagtttcttcgttttaccatgaacaagtttgttggagaaattcctgcagcgttgggggacttatcacaacttcaatatttacgtcttg 100  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  22880736 ttgcgccggttaaagtttcttcgttttagcatgaacaagtttgttggagaaattcctgcagcgttgggggaattatcgcaacttcaatatttacgtcttg 22880835  T
Q  101 gaaataacaattttaatggttccattcccaaatctattggtaaccttcgtcagttgaaattttttacagttgttaaaaacaggttctctggattcatacc 200  Q
    ||| |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||||||| |||||    
T  22880836 gaattaacaattttaatggttctattccccaatctattggtaaccttcgtcggttgaaattgtttaccgttgttaaaaacatgttctctggattgatacc 22880935  T
Q  201 tcaaacaatttcaaatatgtcttcacttgaatatatcggcttctcttctaactacttttcaggtactcatagctttgatattaaatgtgttatttaaaat 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  22880936 tcaaacaatttcaaatatgtcttcacttgaatatgtcggcttctcttctaactacttttcaggtactcatagctttgatattaaatgtgttatttacgat 22881035  T
Q  301 atatctctgct 311  Q
    |||||| ||||    
T  22881036 atatctttgct 22881046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 283
Target Start/End: Complemental strand, 25469933 - 25469702
Alignment:
Q  52 attcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctattggtaaccttcgtc 151  Q
    |||||||||||||||| ||||||||||||||||||||||||   |||||    ||||||||||| ||||||  | ||| ||||||||||||| |||||||    
T  25469933 attcctgcagcgttggaggacttatcacaacttcaatatttgtatcttgctgctaacaattttagtggttctgtcccccaatctattggtaaacttcgtc 25469834  T
Q  152 agttgaaatttttt-acagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatatatcggcttctcttcta 250  Q
    |||||||| | ||  | | || || | ||||| || ||||||  |||||||||| ||||||||||| |||| ||||||||||||||||  || || || |    
T  25469833 agttgaaagtattggatactt-ttcagaacagattgtctggacccatacctcaatcaatttcaaatttgtcctcacttgaatatatcgatttatcatcca 25469735  T
Q  251 actacttttcaggtactcatagctttgatatta 283  Q
    |||||||||||||||||| ||||  ||||||||    
T  25469734 actacttttcaggtactcctagcactgatatta 25469702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 264
Target Start/End: Original strand, 24917197 - 24917423
Alignment:
Q  38 agtttgttggagaaattcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctat 137  Q
    |||||||||||| |||||||   || ||||||||||||||||||||||| ||||||  ||||||   ||||||||||| |||||   ||||  |||||||    
T  24917197 agtttgttggaggaattcctaacgcattgggggacttatcacaacttcagtatttatatcttggtgctaacaattttagtggttttcttccacaatctat 24917296  T
Q  138 tggtaaccttcgtcagttgaaattttttacagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatatatc 237  Q
    |||||| ||||||| ||| ||| | || | | ||| ||| |||| ||| ||| || |||||||||||||||||||||| |||||||||||||||||| |     
T  24917297 tggtaatcttcgtcggttaaaagtattgaaaattggtaacaacaagttgtctagactcatacctcaaacaatttcaaacatgtcttcacttgaatatctt 24917396  T
Q  238 ggcttctcttctaactacttttcaggt 264  Q
    || ||  |||  |||||||||||||||    
T  24917397 ggtttacctttcaactacttttcaggt 24917423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 267
Target Start/End: Complemental strand, 25688302 - 25688087
Alignment:
Q  52 attcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctattggtaaccttcgtc 151  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||   ||||||||||| |||||   | ||| ||||||||||||| |||||||    
T  25688302 attcctgcagcgttgggggacttatcacaacttcaatatttgtatcttggtgctaacaattttagtggttttgtaccccaatctattggtaaacttcgtc 25688203  T
Q  152 agttgaaattttttacagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatatatcggcttctcttctaa 251  Q
    ||||||||   ||      | || ||||||| || ||||||  |||||||||| ||||||||||| |||| |||||||||  |||||| || ||||  ||    
T  25688202 agttgaaagaattggatactattcaaaacagattgtctggacccatacctcaatcaatttcaaatttgtcctcacttgaacgtatcggtttatctttcaa 25688103  T
Q  252 ctacttttcaggtact 267  Q
    ||||||||||||||||    
T  25688102 ctacttttcaggtact 25688087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 268
Target Start/End: Complemental strand, 25599359 - 25599125
Alignment:
Q  34 aacaagtttgttggagaaattcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaat 133  Q
    |||||||||||||| |||||||||||| | |  ||||||||||||| ||||||||||||   |||||    |||   |||||||||||  |||||| |||    
T  25599359 aacaagtttgttggggaaattcctgcaacataaggggacttatcacgacttcaatatttgtatcttgacgctaaattttttaatggttttattccccaat 25599260  T
Q  134 ctattggtaaccttcgtcagttgaaattttttacagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaata 233  Q
    |||||||||||||||||| | | | | | ||   | ||| ||| |||| ||| |||||| |||||||||||||| | ||||| ||| |||||||||||||    
T  25599259 ctattggtaaccttcgtcggctaagagtattggaatttggtaagaacaagttgtctggactcatacctcaaacactctcaaacatgacttcacttgaata 25599160  T
Q  234 tatcggcttctcttctaactacttttcaggtactc 268  Q
    | | ||||| ||||| || ||||||||||||||||    
T  25599159 tctaggcttatcttccaattacttttcaggtactc 25599125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 283
Target Start/End: Complemental strand, 25331156 - 25330925
Alignment:
Q  52 attcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctattggtaaccttcgtc 151  Q
    ||||||||| ||||||||||||||||||||||||| |||||   ||||||   ||||||||||| |||||   |||||   ||||||||||| |||||||    
T  25331156 attcctgcatcgttgggggacttatcacaacttcagtatttgtatcttggtgctaacaattttagtggttttcttccccggtctattggtaatcttcgtc 25331057  T
Q  152 agttgaaattttttacagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatatatcggcttctcttctaa 251  Q
     |||||||   ||       | | |||  ||| | ||||||  |||||||||||||||||||||| ||||||||||||||||||| |  || ||||| ||    
T  25331056 ggttgaaacacttgcataccgctcaaagtaggctgtctggacccatacctcaaacaatttcaaatttgtcttcacttgaatatattgatttatcttccaa 25330957  T
Q  252 ctacttttcaggtactcatagctttgatatta 283  Q
    ||||||||||||||||| ||||| ||||||||    
T  25330956 ctacttttcaggtactcctagctctgatatta 25330925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 283
Target Start/End: Complemental strand, 25710941 - 25710710
Alignment:
Q  52 attcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctattggtaaccttcgtc 151  Q
    |||||||||||||| |||||||||||||||||| |||||||   ||||||   ||||||||| | |||||  |||||| |||||||||||||||||| ||    
T  25710941 attcctgcagcgttaggggacttatcacaacttgaatatttgtatcttggcgttaacaatttcagtggttttattccccaatctattggtaaccttcatc 25710842  T
Q  152 agttgaaattttttacagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatatatcggcttctcttctaa 251  Q
    ||||||||   ||   | | | | | |||| | | ||||||  ||||||||||||||||| ||| ||||||||||||||| |||||   ||  ||  |||    
T  25710841 agttgaaagaattggaaatagatcagaacaagatgtctggacccatacctcaaacaattttaaacatgtcttcacttgaacatatcaatttagctgttaa 25710742  T
Q  252 ctacttttcaggtactcatagctttgatatta 283  Q
    ||||||||||||||||| ||||| | ||||||    
T  25710741 ctacttttcaggtactcctagctctaatatta 25710710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 52 - 268
Target Start/End: Complemental strand, 25738250 - 25738034
Alignment:
Q  52 attcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctattggtaaccttcgtc 151  Q
    |||||||||||||| |||||||||||||||||| |||||||   ||||||   ||||||||| | |||||  ||| || |||||||||||||||||| ||    
T  25738250 attcctgcagcgttaggggacttatcacaacttgaatatttgtatcttggcgttaacaatttcagtggttttatttcccaatctattggtaaccttcatc 25738151  T
Q  152 agttgaaattttttacagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatatatcggcttctcttctaa 251  Q
    ||||||||   ||   | ||| | | |||| | | ||||||  ||||||||||||||||| ||| ||||||||||||||| |||||   ||  ||  |||    
T  25738150 agttgaaagaattggaaattggtcagaacaagatgtctggacccatacctcaaacaattttaaacatgtcttcacttgaacatatcaatttagctgttaa 25738051  T
Q  252 ctacttttcaggtactc 268  Q
    |||||||||||||||||    
T  25738050 ctacttttcaggtactc 25738034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 234
Target Start/End: Original strand, 24890483 - 24890679
Alignment:
Q  38 agtttgttggagaaattcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctat 137  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||  | | | ||||||   |||||||||||  ||||   ||||| |||| ||    
T  24890483 agtttgttggaggaattcctgaagcgttgggggacttatcacaacttcaaattgtgcatcttggcgctaacaattttagaggttttcttccccaatcgat 24890582  T
Q  138 tggtaaccttcgtcagtt-gaaattttttacagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatat 234  Q
    |||||| ||||| |||||  ||| |||| | | | |||  ||||| ||| | ||||  ||||||||||||||||||||| ||||||||||||||||||    
T  24890583 tggtaatcttcgccagttaaaaagttttgatattagtt-gaaacatgttgtttggacccatacctcaaacaatttcaaacatgtcttcacttgaatat 24890679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 234
Target Start/End: Complemental strand, 25501129 - 25500933
Alignment:
Q  38 agtttgttggagaaattcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctat 137  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||  ||||  ||||||   |||||||||||  ||||   ||||| |||| ||    
T  25501129 agtttgttggaggaattcctgaagcgttgggggacttatcacaacttcaaattttatatcttggcgctaacaattttagcggttttcttccccaatcgat 25501030  T
Q  138 tggtaaccttcgtcagttgaaattttttacagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatat 234  Q
    |||||| ||||| ||||| |||   |||    ||  |   |||| ||| ||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  25501029 tggtaatcttcgccagttaaaaagatttgatattagtcggaacatgttgtctggacccatacctcaaacaatttcaaacatgtcttcacttgaatat 25500933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 268
Target Start/End: Complemental strand, 25730764 - 25730548
Alignment:
Q  52 attcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctattggtaaccttcgtc 151  Q
    |||||||||||||| |||||||||||||||||| |||||||   ||||||   ||||||||| | |||||  ||| || |||||||||||||||||| ||    
T  25730764 attcctgcagcgttaggggacttatcacaacttgaatatttgtatcttggcgttaacaatttcagtggttttatttcccaatctattggtaaccttcatc 25730665  T
Q  152 agttgaaattttttacagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatatatcggcttctcttctaa 251  Q
    ||||||||   ||   | ||| |   |||| | | ||||||  ||||||||||||||||| ||| ||||||||||||||| |||||   ||  ||  |||    
T  25730664 agttgaaagaattgggaattggtcggaacaagatgtctggacccatacctcaaacaattttaaacatgtcttcacttgaacatatcaatttagctgttaa 25730565  T
Q  252 ctacttttcaggtactc 268  Q
    |||||||||||||||||    
T  25730564 ctacttttcaggtactc 25730548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 25407846 - 25407750
Alignment:
Q  52 attcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctattggtaaccttc 148  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||   ||||||||||| |||||  || ||| |||||||||| |||||||    
T  25407846 attcctgcagcgttgggggacttatcacaacttcaatatttgtatcttggtgctaacaattttactggttttatccccgaatctattggcaaccttc 25407750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 234
Target Start/End: Complemental strand, 25428390 - 25428194
Alignment:
Q  38 agtttgttggagaaattcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctat 137  Q
    |||||||||| | |||||||| ||||||||||||||||||||||||||||  | | | ||||||   |||||||||||  ||||   ||||| |||| ||    
T  25428390 agtttgttggtggaattcctgaagcgttgggggacttatcacaacttcaaattgtgcatcttggcgctaacaattttagaggttttcttccccaatcgat 25428291  T
Q  138 tggtaaccttcgtcagttgaaattttttacagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatat 234  Q
    |||||| ||||| ||||| |||  ||||    ||  |  ||||| ||| | ||||  ||||||||||||||||||||| ||||||||||||||||||    
T  25428290 tggtaatcttcgccagttaaaaagttttgatattagtcgaaacatgttgtttggacccatacctcaaacaatttcaaacatgtcttcacttgaatat 25428194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 25379776 - 25379679
Alignment:
Q  52 attcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctattggtaaccttcg 149  Q
    ||||||||||||||| |||||||||||||||||||||||||   ||||||   ||||||||||| |||||  || ||| |||||||||| ||||||||    
T  25379776 attcctgcagcgttgtgggacttatcacaacttcaatatttgtatcttggcgctaacaattttactggttttatccccgaatctattggcaaccttcg 25379679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 265
Target Start/End: Complemental strand, 25485983 - 25485752
Alignment:
Q  34 aacaagtttgttggagaaattcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaat 133  Q
    ||||||||||  |||| |||  ||| |||||||||| | ||||| ||||||||||||||   ||||||   ||||||||||| |||||  || ||  |||    
T  25485983 aacaagtttgaaggaggaatctctgaagcgttggggaatttatcgcaacttcaatatttgtatcttggcgctaacaattttagtggttttatccctgaat 25485884  T
Q  134 ctattggtaaccttcgtcagttgaaattttttacagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaata 233  Q
    |||| |||| ||||| ||||||||| || ||   | ||  ||| ||||  || |||||| ||||||||||||   ||||||| |||||||||||||||||    
T  25485883 ctatcggtagccttcatcagttgaagttattggaaattagtaagaacaatttgtctggactcatacctcaaatggtttcaaacatgtcttcacttgaata 25485784  T
Q  234 tatcggcttctcttctaactacttttcaggta 265  Q
    | | |  || ||||| ||||||||||||||||    
T  25485783 tctagatttatcttccaactacttttcaggta 25485752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 234
Target Start/End: Complemental strand, 25825816 - 25825620
Alignment:
Q  38 agtttgttggagaaattcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctat 137  Q
    |||||||||||| |||||||| | |||||||||| |||||||||||||||  ||| | ||||||   |||||||||||  ||||   ||||| |||| ||    
T  25825816 agtttgttggaggaattcctgaaacgttgggggagttatcacaacttcaaattttgcatcttggcgctaacaattttagcggttttcttccccaatcgat 25825717  T
Q  138 tggtaaccttcgtcagttgaaattttttacagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatat 234  Q
    |||||| ||| | || || |||  ||||    ||  |   |||| ||| ||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  25825716 tggtaatctttgccaattaaaaagttttgatattagtcggaacatgttgtctggacccatacctcaaacaatttcaaacatgtcttcacttgaatat 25825620  T

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Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 23261919 - 23261869
Alignment:
Q  184 ttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatat 234  Q
    |||||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  23261919 ttctctggacacatacctcaaacaatttcaaacatgtcttcacttgaatat 23261869  T

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Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 25687236 - 25687126
Alignment:
Q  49 gaaattcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctattggtaaccttc 148  Q
    |||||||||| | |||||||||||||||||| ||||||||||||   |||||    ||||||||||| |||||  || ||| |||||||||| |||||||    
T  25687236 gaaattcctgtaacgttgggggacttatcacgacttcaatatttgtatcttgacgctaacaattttagtggttttatcccccaatctattggcaaccttc 25687137  T
Q  149 gtcagttgaaa 159  Q
    ||  |||||||    
T  25687136 gttggttgaaa 25687126  T

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Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 25635264 - 25635163
Alignment:
Q  178 aacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatatatcggcttctcttctaactacttttcaggtactcatagctttg 277  Q
    |||| ||| ||||||  ||||||||||||||||||||| |||||||||||||||||| | || ||    | |||||||||||||||||  | ||||||||    
T  25635264 aacatgttgtctggacccatacctcaaacaatttcaaacatgtcttcacttgaatatcttggtttacagtataactacttttcaggtaaacctagctttg 25635165  T
Q  278 at 279  Q
    ||    
T  25635164 at 25635163  T

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Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 283
Target Start/End: Complemental strand, 25419893 - 25419805
Alignment:
Q  195 catacctcaaacaatttcaaatatgtcttcacttgaatatatcggcttctcttctaactacttttcaggtactcatagctttgatatta 283  Q
    ||||||||||||||||||||| |||||||||||||||||| | || ||   |  ||||||||||||||||| |  ||||| ||||||||    
T  25419893 catacctcaaacaatttcaaacatgtcttcacttgaatatcttggtttacatcttaactacttttcaggtaatgctagctctgatatta 25419805  T

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Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 25379633 - 25379560
Alignment:
Q  195 catacctcaaacaatttcaaatatgtcttcacttgaatatatcggcttctcttctaactacttttcaggtactc 268  Q
    ||||||||||||||||||||| ||||||||||| |||  | ||   || | |||||||||||||||||||||||    
T  25379633 catacctcaaacaatttcaaacatgtcttcactcgaagttctccatttattttctaactacttttcaggtactc 25379560  T

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Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 25407703 - 25407630
Alignment:
Q  195 catacctcaaacaatttcaaatatgtcttcacttgaatatatcggcttctcttctaactacttttcaggtactc 268  Q
    ||||||||||||||||||||| ||||||||||| |||  | ||   || | |||||||||||||||||||||||    
T  25407703 catacctcaaacaatttcaaacatgtcttcactcgaagttctcaagttattttctaactacttttcaggtactc 25407630  T

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Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 268
Target Start/End: Original strand, 23394421 - 23394650
Alignment:
Q  39 gtttgttggagaaattcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctatt 138  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||   ||||||    |||||||||| |||||  || ||| ||||||||    
T  23394421 gtttgttggaggaattcctgaagcgttgggggacttatcacgacttcaatatttgtatcttggtgtaaacaattttagtggttttatcccccaatctatt 23394520  T
Q  139 ggtaaccttcgtcagttgaaattttttacagttgttaaaaacaggttctctggattcatacctcaaacaatttcaaatatgtcttcacttgaatatatcg 238  Q
    ||| | ||||||||||||| || ||||  | ||| | | |||| | | | ||||  ||||||||||||||||||||| |||||||||||| ||||||| |    
T  23394521 ggttatcttcgtcagttgatatattttgaaattggtcacaacaagatgtatggacccatacctcaaacaatttcaaacatgtcttcacttaaatatattg 23394620  T
Q  239 gcttctcttctaactacttttcaggtactc 268  Q
    | || |||||||||||||||||||||||||    
T  23394621 gtttatcttctaactacttttcaggtactc 23394650  T

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Target: scaffold0070 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 41349 - 41403
Alignment:
Q  38 agtttgttggagaaattcctgcagcgttgggggacttatcacaacttcaatattt 92  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41349 agttttttggagaaattcctgaagcgttgggggacttatcacaacttcaatattt 41403  T

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Target: scaffold0070; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 25671 - 25767
Alignment:
Q  52 attcctgcagcgttgggggacttatcacaacttcaatatttacgtcttggaaataacaattttaatggttccattcccaaatctattggtaaccttc 148  Q
    |||||| |||| |||||| ||||||||||||||||||||||   ||| || | |||||||||||||||||  |||||| ||||||| ||||||||||    
T  25671 attcctccagcattggggaacttatcacaacttcaatatttgtatctcggcactaacaattttaatggttttattccccaatctatgggtaaccttc 25767  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 10332051 - 10332023
Alignment:
Q  64 ttgggggacttatcacaacttcaatattt 92  Q
    |||||||||||||||||||||||||||||    
T  10332051 ttgggggacttatcacaacttcaatattt 10332023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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