View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3211_low_19 (Length: 308)

Name: NF3211_low_19
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3211_low_19
NF3211_low_19
[»] chr1 (10 HSPs)
chr1 (75-150)||(12532927-12533002)
chr1 (74-137)||(12535404-12535467)
chr1 (75-138)||(6326682-6326745)
chr1 (71-138)||(14508739-14508806)
chr1 (75-146)||(12540645-12540716)
chr1 (93-140)||(4872623-4872670)
chr1 (72-138)||(14470549-14470615)
chr1 (71-149)||(28239151-28239229)
chr1 (92-138)||(28326411-28326457)
chr1 (73-138)||(14507267-14507332)
[»] chr6 (1 HSPs)
chr6 (71-138)||(384619-384686)
[»] chr5 (1 HSPs)
chr5 (71-138)||(1717979-1718046)
[»] chr3 (1 HSPs)
chr3 (72-139)||(47924841-47924908)
[»] chr2 (2 HSPs)
chr2 (75-138)||(9066378-9066441)
chr2 (72-138)||(9068561-9068627)


Alignment Details
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 12532927 - 12533002
Alignment:
Q  75 aattctttaaacaaggcaattgcttgtttaaattgactgttgatgcaatagccatagattagatagctatatgtgg 150  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||  | |||||||||    
T  12532927 aattctttaaacaaggcaattgcttgtttaaattgaccgttgatgtaatagccatagattagagggttatatgtgg 12533002  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 12535404 - 12535467
Alignment:
Q  74 caattctttaaacaaggcaattgcttgtttaaattgactgttgatgcaatagccatagattaga 137  Q
    ||||||| |||||| ||||||||||||||||||||||| | |||||||||||||||||||||||    
T  12535404 caattctctaaacatggcaattgcttgtttaaattgaccggtgatgcaatagccatagattaga 12535467  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 6326682 - 6326745
Alignment:
Q  75 aattctttaaacaaggcaattgcttgtttaaattgactgttgatgcaatagccatagattagat 138  Q
    |||| ||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||    
T  6326682 aattttttaaacaaggcaattgcttgttcaaattgaccgaggatgcaatagccatagattagat 6326745  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 14508739 - 14508806
Alignment:
Q  71 ctccaattctttaaacaaggcaattgcttgtttaaattgactgttgatgcaatagccatagattagat 138  Q
    |||||||| | |||||||||||||||||||||||||||||| |  ||||||||| |||||||||||||    
T  14508739 ctccaattttctaaacaaggcaattgcttgtttaaattgaccgacgatgcaataaccatagattagat 14508806  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 12540716 - 12540645
Alignment:
Q  75 aattctttaaacaaggcaattgcttgtttaaattgactgttgatgcaatagccatagattagatagctatat 146  Q
    |||||| ||||||||||||||||||| ||||||||||   |||||||||||||||||| |||| ||| ||||    
T  12540716 aattctctaaacaaggcaattgcttgcttaaattgaccagtgatgcaatagccatagactagacagcaatat 12540645  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 4872670 - 4872623
Alignment:
Q  93 attgcttgtttaaattgactgttgatgcaatagccatagattagatag 140  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||||    
T  4872670 attgcttgtttaaattgaccgaggatgcaatagccatagattagatag 4872623  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 14470549 - 14470615
Alignment:
Q  72 tccaattctttaaacaaggcaattgcttgtttaaattgactgttgatgcaatagccatagattagat 138  Q
    ||||||||| |||||||||||||||||| |||||||||||   |||||||| | ||| |||||||||    
T  14470549 tccaattctctaaacaaggcaattgcttttttaaattgaccaatgatgcaacaaccaaagattagat 14470615  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 28239229 - 28239151
Alignment:
Q  71 ctccaattctttaaacaaggcaattgcttgtttaaattgactgttgatgcaatagccatagattagatagctatatgtg 149  Q
    |||||||||| |||| ||| ||||||| ||||||||||||| |  ||||||||| ||||||| |||||  |||||||||    
T  28239229 ctccaattctataaagaagtcaattgcctgtttaaattgaccgaggatgcaataaccatagactagatgactatatgtg 28239151  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 28326457 - 28326411
Alignment:
Q  92 aattgcttgtttaaattgactgttgatgcaatagccatagattagat 138  Q
    |||||||||||||||||||| | |||| ||||||||| |||||||||    
T  28326457 aattgcttgtttaaattgaccgatgatacaatagccaaagattagat 28326411  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 14507267 - 14507332
Alignment:
Q  73 ccaattctttaaacaaggcaattgcttgtttaaattgactgttgatgcaatagccatagattagat 138  Q
    |||||||| |||||||||||||||||| || ||||||||    ||||||| ||||| |||||||||    
T  14507267 ccaattctctaaacaaggcaattgctttttcaaattgaccaacgatgcaacagccaaagattagat 14507332  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 384619 - 384686
Alignment:
Q  71 ctccaattctttaaacaaggcaattgcttgtttaaattgactgttgatgcaatagccatagattagat 138  Q
    |||||||||||||||||||||||||||||||||||||||||   ||||||||| | ||||||||||||    
T  384619 ctccaattctttaaacaaggcaattgcttgtttaaattgacgagtgatgcaatggacatagattagat 384686  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 1718046 - 1717979
Alignment:
Q  71 ctccaattctttaaacaaggcaattgcttgtttaaattgactgttgatgcaatagccatagattagat 138  Q
    |||||||| | ||||||||||||||||||||||||||||||    ||||||||| |||||||||||||    
T  1718046 ctccaattttctaaacaaggcaattgcttgtttaaattgaccaacgatgcaataaccatagattagat 1717979  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 47924841 - 47924908
Alignment:
Q  72 tccaattctttaaacaaggcaattgcttgtttaaattgactgttgatgcaatagccatagattagata 139  Q
    ||||||||| ||| ||||||||| ||||||||||||| || | ||||||||||||||| |||||||||    
T  47924841 tccaattctctaagcaaggcaatcgcttgtttaaattcaccgatgatgcaatagccattgattagata 47924908  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 9066441 - 9066378
Alignment:
Q  75 aattctttaaacaaggcaattgcttgtttaaattgactgttgatgcaatagccatagattagat 138  Q
    |||||| ||||||||||||||||| |||||||||||| |  ||| ||||| |||||||||||||    
T  9066441 aattctctaaacaaggcaattgctggtttaaattgaccgacgatacaataaccatagattagat 9066378  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 9068627 - 9068561
Alignment:
Q  72 tccaattctttaaacaaggcaattgcttgtttaaattgactgttgatgcaatagccatagattagat 138  Q
    ||||||||| ||||||||||||   |||||||||||||||    |||||||||||||||||||||||    
T  9068627 tccaattctctaaacaaggcaacaacttgtttaaattgaccaacgatgcaatagccatagattagat 9068561  T

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