View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3211_low_21 (Length: 282)

Name: NF3211_low_21
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3211_low_21
NF3211_low_21
[»] chr7 (14 HSPs)
chr7 (19-275)||(24137475-24137731)
chr7 (19-275)||(24145211-24145467)
chr7 (83-277)||(24126208-24126402)
chr7 (19-156)||(24125908-24126045)
chr7 (101-271)||(24284870-24285040)
chr7 (158-271)||(24231753-24231866)
chr7 (108-252)||(24121199-24121343)
chr7 (83-251)||(24238929-24239097)
chr7 (107-277)||(21200344-21200514)
chr7 (126-270)||(24150294-24150438)
chr7 (237-277)||(24160498-24160538)
chr7 (122-268)||(3494048-3494194)
chr7 (104-277)||(21195098-21195271)
chr7 (82-138)||(24160343-24160399)
[»] chr1 (1 HSPs)
chr1 (128-275)||(15381025-15381172)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 24137475 - 24137731
Alignment:
Q  19 tatctggttcctgagttcagattgtatggaaatcattggaatggatagtctgtctttcataagttgtgacctcaaacacttgtctgaactcaattcagtc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24137475 tatctggttcctgagttcagattgtatggaaatcattggaatggttagtctgtctttcataagttgtgacctcaaacacttgtctgaactcaattcagtc 24137574  T
Q  119 acactcttatataaattatcaaagcagcttataaaagagaatccttggagaatatgcaacaccgatcccaagggaaaagtgagaaaactaaaaactaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  24137575 acactcttatataaattatcaaagcagcttataaaagagaatccttggagaatatgcaacaccgatcccaaaggaaaagtgagaaaactaaaaaccaaat 24137674  T
Q  219 cagcaaaatcatcatctgcttcaacaaacaaaatctgttcatttgattttcttctca 275  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24137675 cagcaaaatcatcatctgcttcaacaaacaaaatctgtttatttgattttcttctca 24137731  T

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Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 24145211 - 24145467
Alignment:
Q  19 tatctggttcctgagttcagattgtatggaaatcattggaatggatagtctgtctttcataagttgtgacctcaaacacttgtctgaactcaattcagtc 118  Q
    ||||||||  ||||||||||||||    |||||  ||||| ||| |||| ||||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  24145211 tatctggtgtctgagttcagattgagcagaaatggttggactggttagtatgtctttgaaaagctgtgacctcaaacacttgtctgaactcaattcagtc 24145310  T
Q  119 acactcttatataaattatcaaagcagcttataaaagagaatccttggagaatatgcaacaccgatcccaagggaaaagtgagaaaactaaaaactaaat 218  Q
    || ||||| ||||||||||||| |||||||| |||||||||||||||| || |||||||||| | ||| ||||| |||||||||||||||||||| || |    
T  24145311 acgctcttgtataaattatcaatgcagcttacaaaagagaatccttggcgagtatgcaacactgctcctaaggggaaagtgagaaaactaaaaacgaagt 24145410  T
Q  219 cagcaaaatcatcatctgcttcaacaaacaaaatctgttcatttgattttcttctca 275  Q
    |||| ||||| || ||||||||||||||||||||||||| |||||||||||||||||    
T  24145411 cagcgaaatcttcctctgcttcaacaaacaaaatctgtttatttgattttcttctca 24145467  T

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Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 83 - 277
Target Start/End: Original strand, 24126208 - 24126402
Alignment:
Q  83 tgtgacctcaaacacttgtctgaactcaattcagtcacactcttatataaattatcaaagcagcttataaaagagaatccttggagaatatgcaacaccg 182  Q
    |||||||| || || || ||||| |||||||||||||||||||||||||||||||||| ||||||||   |||||||||||| | | ||| | |||||      
T  24126208 tgtgaccttaaccatttttctgagctcaattcagtcacactcttatataaattatcaatgcagcttaaggaagagaatccttcgtgcataagtaacactc 24126307  T
Q  183 atcccaagggaaaagtgagaaaactaaaaactaaatcagcaaaatcatcatctgcttcaacaaacaaaatctgttcatttgattttcttctcact 277  Q
     |||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||| |||||| ||||| | |||||||||||||||||||    
T  24126308 ctcccaagggaaatgtgagaaaactaaaaacaaaatcagcaaaatcttcctctgcttcaataaacaagatctgcttatttgattttcttctcact 24126402  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 24125908 - 24126045
Alignment:
Q  19 tatctggttcctgagttcagattgtatggaaatcattggaatggatagtctgtctttcataagttgtgacctcaaacacttgtctgaactcaattcagtc 118  Q
    ||||||||  ||||||||||||||   ||||||  ||||| ||| |||| ||||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  24125908 tatctggtgtctgagttcagattgagcggaaatggttggactggttagtatgtctttgaaaagctgtgacctcaaacacttgtctgaactcaattcagtc 24126007  T
Q  119 acactcttatataaattatcaaagcagcttataaaaga 156  Q
    || ||||| ||||||||||||| |||||||| ||||||    
T  24126008 acgctcttgtataaattatcaatgcagcttacaaaaga 24126045  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 271
Target Start/End: Complemental strand, 24285040 - 24284870
Alignment:
Q  101 tctgaactcaattcagtcacactcttatataaattatcaaagcagcttataaaagagaatccttggagaatatgcaacaccgatcccaagggaaaagtga 200  Q
    |||| |||||||||||| || || |||||||||||||||| |||||||| | ||||||||||||| || |||||||||||    |||||||| || || |    
T  24285040 tctggactcaattcagttacgcttttatataaattatcaatgcagcttaaagaagagaatccttgaagcatatgcaacactccccccaaggggaaggtta 24284941  T
Q  201 gaaaactaaaaactaaatcagcaaaatcatcatctgcttcaacaaacaaaatctgttcatttgattttctt 271  Q
    ||||||||||||  || |||  ||||||  |  || |||||||||||||||||| | |  |||||||||||    
T  24284940 gaaaactaaaaataaagtcaataaaatctacccctccttcaacaaacaaaatctctccggttgattttctt 24284870  T

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Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 24231753 - 24231866
Alignment:
Q  158 aatccttggagaatatgcaacaccgatcccaagggaaaagtgagaaaactaaaaactaaatcagcaaaatcatcatctgcttcaacaaacaaaatctgtt 257  Q
    |||||||| || |||||||||||   ||| |||||||| || |||||||||||||| || |||  |||||||||  ||||||||||||||| ||| ||||    
T  24231753 aatccttgaagcatatgcaacactcctcctaagggaaatgttagaaaactaaaaacaaagtcaataaaatcatctcctgcttcaacaaacagaatttgtt 24231852  T
Q  258 catttgattttctt 271  Q
    |||||| |||||||    
T  24231853 catttgtttttctt 24231866  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 252
Target Start/End: Original strand, 24121199 - 24121343
Alignment:
Q  108 tcaattcagtcacactcttatataaattatcaaagcagcttataaaagagaatccttggagaatatgcaacaccgatcccaagggaaaagtgagaaaact 207  Q
    |||| |||||||  || ||||||||| |||||| |||||||| | ||||||||||||  || || ||||||||   ||||| |||||| || ||||||||    
T  24121199 tcaactcagtcatgcttttatataaaatatcaatgcagcttaaagaagagaatccttctagcatttgcaacactcctcccatgggaaatgttagaaaact 24121298  T
Q  208 aaaaactaaatcagcaaaatcatcatctgcttcaacaaacaaaat 252  Q
    |||||  ||||| |||||||| |||||||||  | ||||||||||    
T  24121299 aaaaagaaaatctgcaaaatcttcatctgctgtagcaaacaaaat 24121343  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 251
Target Start/End: Complemental strand, 24239097 - 24238929
Alignment:
Q  83 tgtgacctcaaacacttgtctgaactcaattcagtcacactcttatataaattatcaaagcagcttataaaagagaatccttggagaatatgcaacaccg 182  Q
    |||||| ||||| || | |||||||||||  ||||||  ||  | ||||||||||||| |||||||||| |||| |||||||| || |||||||||||      
T  24239097 tgtgacatcaaatacctatctgaactcaaagcagtcatgctggtgtataaattatcaatgcagcttatagaagaaaatccttgaagcatatgcaacactc 24238998  T
Q  183 atcccaagggaaaagtgagaaaactaaaaactaaatcagcaaaatcatcatctgcttcaacaaacaaaa 251  Q
     ||| ||||| |||||||||||||| ||||  || || |||||||| || || |||||| || ||||||    
T  24238997 ctcctaaggggaaagtgagaaaactcaaaagaaagtccgcaaaatcttcctcagcttcagcatacaaaa 24238929  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 277
Target Start/End: Complemental strand, 21200514 - 21200344
Alignment:
Q  107 ctcaattcagtcacactcttatataaattatcaaagcagcttataaaagagaatccttggagaatatgcaacaccgatcccaagggaaaagtgagaaaac 206  Q
    ||||| || ||||| || || ||||||||||||| |||| ||| | ||||||| ||||| || |||||||||||   |||||| || ||||| |||||||    
T  21200514 ctcaactcggtcacgcttttgtataaattatcaatgcagtttaaagaagagaaaccttgaagcatatgcaacactcctcccaaagggaaagttagaaaac 21200415  T
Q  207 taaaaactaaatcagcaaaatcatcatctgcttcaacaaacaaaatctgttcatttgattttcttctcact 277  Q
    | ||||  || | |  |||||||||   ||||||| |||||||||||| | || |||||||||||||||||    
T  21200414 tgaaaataaagttaataaaatcatctcttgcttcagcaaacaaaatctctccagttgattttcttctcact 21200344  T

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Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 270
Target Start/End: Original strand, 24150294 - 24150438
Alignment:
Q  126 tatataaattatcaaagcagcttataaaagagaatccttggagaatatgcaacaccgatcccaagggaaaagtgagaaaactaaaaactaaatcagcaaa 225  Q
    ||||||||||||||| ||| |||| |||||||||||||   |  ||||| |  ||   ||| || ||||| || ||||||||||| || || ||||||||    
T  24150294 tatataaattatcaatgcaccttagaaaagagaatcctccaaacatatgtataacacttcctaatggaaatgttagaaaactaaatacaaagtcagcaaa 24150393  T
Q  226 atcatcatctgcttcaacaaacaaaatctgttcatttgattttct 270  Q
    ||| || | |||||||||||||||||| ||||||||||| |||||    
T  24150394 atcttcttgtgcttcaacaaacaaaatttgttcatttgactttct 24150438  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 24160498 - 24160538
Alignment:
Q  237 cttcaacaaacaaaatctgttcatttgattttcttctcact 277  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24160498 cttcaacaaacaaaatctgttcatttgattttcttctcact 24160538  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 268
Target Start/End: Original strand, 3494048 - 3494194
Alignment:
Q  122 ctcttatataaattatcaaagcagcttataaaagagaatccttggagaatatgcaacaccgatcccaagggaaaagtgagaaaactaaaaactaaatcag 221  Q
    ||||| ||||| ||||||| |||||||| | | ||||||||||| || || || || |||  ||| ||||| || || ||||||||| |||| || |||     
T  3494048 ctcttgtataagttatcaatgcagcttaaagaggagaatccttgaagcatgtgtaaaacccgtcctaaggggaaggttagaaaactataaacaaagtcaa 3494147  T
Q  222 caaaatcatcatctgcttcaacaaacaaaatctgttcatttgatttt 268  Q
    ||||||||||  | ||||||||||||| ||| ||||||| |||||||    
T  3494148 caaaatcatccccggcttcaacaaacagaatttgttcatctgatttt 3494194  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 277
Target Start/End: Complemental strand, 21195271 - 21195098
Alignment:
Q  104 gaactcaattcagtcacactcttatataaattatcaaagcagcttataaaagagaatccttggagaatatgcaacaccgatcccaagggaaaagtgagaa 203  Q
    |||||||| |||||||  || || ||||||||||| | || | ||| | ||||||| ||||  || |||||||||||   ||| ||||| | ||| ||||    
T  21195271 gaactcaactcagtcaagcttttgtataaattatcgatgctgtttagagaagagaaaccttcaagcatatgcaacactcctcctaaggggagagttagaa 21195172  T
Q  204 aactaaaaactaaatcagcaaaatcatcatctgcttcaacaaacaaaatctgttcatttgattttcttctcact 277  Q
    |||| ||||  || | |  |||||||||  |||||||| |||||||||| | | || |||||||||||||||||    
T  21195171 aactgaaaataaagttaataaaatcatcgcctgcttcagcaaacaaaatatctccagttgattttcttctcact 21195098  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 24160343 - 24160399
Alignment:
Q  82 ttgtgacctcaaacacttgtctgaactcaattcagtcacactcttatataaattatc 138  Q
    ||||||||| |||||| |||||| | |||| ||||||| ||| ||||||||||||||    
T  24160343 ttgtgaccttaaacacctgtctggattcaactcagtcatactgttatataaattatc 24160399  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 275
Target Start/End: Complemental strand, 15381172 - 15381025
Alignment:
Q  128 tataaattatcaaagcagcttataaaagagaatccttggagaatatgcaacaccgatcccaagggaaaagtgagaaaactaaaaactaaatcagcaaaat 227  Q
    ||||||||||||| ||||||||  |||||||||||||| || |||||||||||   ||| ||||| || || |||||||||||||| || ||   |||||    
T  15381172 tataaattatcaatgcagcttaacaaagagaatccttgaagcatatgcaacactcctcctaaggggaaggttagaaaactaaaaacaaagtcgataaaat 15381073  T
Q  228 catcatctgcttcaacaaacaaaatctgttcatttgattttcttctca 275  Q
    |||| |  || || | ||||| ||| ||||||||||||||||| ||||    
T  15381072 catcttgcgcctctagaaacagaatttgttcatttgattttctcctca 15381025  T

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