View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_low_24 (Length: 266)
Name: NF3211_low_24
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 31492729 - 31492503
Alignment:
| Q |
22 |
ccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaatctttcaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31492729 |
ccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaatctttcaa |
31492630 |
T |
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| Q |
122 |
aacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtcgctggaac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31492629 |
aacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtcgctggaac |
31492530 |
T |
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| Q |
222 |
cggtggagcctgtggataagccagtgg |
248 |
Q |
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||||||||| |||||||||||| |||| |
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| T |
31492529 |
cggtggagcttgtggataagccggtgg |
31492503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 31498118 - 31497892
Alignment:
| Q |
22 |
ccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaatctttcaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31498118 |
ccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaatctttcaa |
31498019 |
T |
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| Q |
122 |
aacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtcgctggaac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31498018 |
aacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtcgctggaac |
31497919 |
T |
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| Q |
222 |
cggtggagcctgtggataagccagtgg |
248 |
Q |
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| T |
31497918 |
cggtggagcttgtggataagccggtgg |
31497892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 31503505 - 31503279
Alignment:
| Q |
22 |
ccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaatctttcaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31503505 |
ccaacaaaagcatcataaatcatatgttcaactccagtcaccccactggttattgcacatgcaactccaatcaaccctacttttaatcccaatctttcaa |
31503406 |
T |
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| Q |
122 |
aacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtcgctggaac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31503405 |
aacgactcctcttaggtttttgtggtcttggattaacatgtggatacattggtggagcctgcaaataaggttgtggagtatatagataggtcgctggaac |
31503306 |
T |
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| Q |
222 |
cggtggagcctgtggataagccagtgg |
248 |
Q |
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||||||||| |||||||||||| |||| |
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| T |
31503305 |
cggtggagcttgtggataagccggtgg |
31503279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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