View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_low_26 (Length: 263)
Name: NF3211_low_26
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 8946681 - 8946919
Alignment:
| Q |
10 |
acatcatcaccgtccgatattgcggcatcaattgcagccattatatcagatgaaattgcaatcggatcttcattttgtccccacacaatcttgtacatag |
109 |
Q |
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| T |
8946681 |
acatcaacaccgtccgatattgcagcatcaattgcagccattatatcagatgaaattgcaattggatcttcattttgtccccacacaatcttgtacatag |
8946780 |
T |
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| Q |
110 |
acactctagacaatgtagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtg |
209 |
Q |
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| T |
8946781 |
acactctagacaatgtagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtg |
8946880 |
T |
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| Q |
210 |
ggttccatgaccatttgtgtcacgtgtagtgttcactat |
248 |
Q |
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| T |
8946881 |
ggttccatgaccatttgtgtcacgtgtagtgttcactat |
8946919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 8973808 - 8973588
Alignment:
| Q |
10 |
acatcatcaccgtccgatattgcggcatcaattgcagccattatatcagatgaaattgcaatcggatcttcattttgtccccacacaatcttgtacatag |
109 |
Q |
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| T |
8973808 |
acatcaacaccgtccgatattgaggcatcaactgcggctattatatcagatgacactgca------tgtccatctttgccccacgcagtcttgtacatag |
8973715 |
T |
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| Q |
110 |
acactctagacaatgtagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtg |
209 |
Q |
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| T |
8973714 |
ctactctagacaatgtagctattcctcttgctgttccgtttgcataaccaaagaatgatgcaccatcaacttgattcccagctgctgttgttgaagtgtg |
8973615 |
T |
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| Q |
210 |
ggttccatgaccatttgtgtcacgtgt |
236 |
Q |
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| T |
8973614 |
tgtcccatgaccatttgtgtcacgtgt |
8973588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 8962295 - 8962176
Alignment:
| Q |
127 |
gctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttg |
226 |
Q |
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| T |
8962295 |
gctattcctcttgctgttccatttgcataaccgaagaatgatgcaccattaacctgattccccgctaccgttgttgaagtgtgggttccatgaccatctg |
8962196 |
T |
|
| Q |
227 |
tgtcacgtgtagtgttcact |
246 |
Q |
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| T |
8962195 |
tgtcacgtgtagagttcact |
8962176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 9950079 - 9950195
Alignment:
| Q |
96 |
aatcttgtacatagacactctagacaatgtagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgct |
195 |
Q |
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| T |
9950079 |
aatcttgtacatagctactctagacaatgtaattatttcttttgtagttcgatttacataaccaaagaaaaatgcaccatcaacttgatttcaagttgtt |
9950178 |
T |
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| Q |
196 |
gttgttgaagtgtgggt |
212 |
Q |
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| T |
9950179 |
gttaatgaagtgtgggt |
9950195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 8962402 - 8962351
Alignment:
| Q |
17 |
caccgtccgatattgcggcatcaattgcagccattatatcagatgaaattgc |
68 |
Q |
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| T |
8962402 |
caccgtctgatattgcggcatcaattgcagctattgtgtcagatgaaagtgc |
8962351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 8957270 - 8957197
Alignment:
| Q |
150 |
tgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccat |
223 |
Q |
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| T |
8957270 |
tgcataaccaaaaaatgaagcatcatcaactctgtttccagctgctgttgatgaagtgtgagtcccatgaccat |
8957197 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 21687833 - 21688046
Alignment:
| Q |
17 |
caccgtccgatattgcggcatcaattgcagccattatatcagatgaaattgcaatcggatcttcattttgtccccacacaatcttgtacatagacactct |
116 |
Q |
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| T |
21687833 |
caccgtcagatattgcagcatcaattgcagctattatatcagatgaaagtgcg------tctccatcttttccccacgcagtcttgtatatagctactct |
21687926 |
T |
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| Q |
117 |
agacaatgtagctattccccttgccgttccatttgcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttcca |
216 |
Q |
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|||| ||| |||||| || ||||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| || || || |
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| T |
21687927 |
agacgatgaagctatacctcttgctgttccatttgcatagccaaagaaagatgcaccatcaactttgcttccagctgctgttgttgaagtatgtgtcccg |
21688026 |
T |
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| Q |
217 |
tgaccatttgtgtcacgtgt |
236 |
Q |
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||||| |||||||||||||| |
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| T |
21688027 |
tgaccgtttgtgtcacgtgt |
21688046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 34963572 - 34963657
Alignment:
| Q |
151 |
gcataaccaaagaaagatgcaccatcaacttgatttccggctgctgttgttgaagtgtgggttccatgaccatttgtgtcacgtgt |
236 |
Q |
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|||||||||||||| |||||| |||||| |||| ||||||||||||||||| || ||||||||||| | |||||||||||| |
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| T |
34963572 |
gcataaccaaagaatgatgcatggtcaactctgcttccagctgctgttgttgaagtatgagttccatgaccttctgtgtcacgtgt |
34963657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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