View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_low_29 (Length: 253)
Name: NF3211_low_29
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 7501881 - 7501847
Alignment:
| Q |
14 |
cacagataagtggcctccgcctccctttttccctt |
48 |
Q |
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| T |
7501881 |
cacagataagtggcctccgcctccctttttccctt |
7501847 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 27257795 - 27257869
Alignment:
| Q |
134 |
tgaatacttgcaagagaatttgaagttaagttggattgtaatcgatccaactcaaaagcatgcagctaacttgtt |
208 |
Q |
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| T |
27257795 |
tgaatatttgcaagaaaatttgaggttgagttgggttgttatcgatccaactcgaaagcgtgcagcaaagttgtt |
27257869 |
T |
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