View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3211_low_3 (Length: 677)

Name: NF3211_low_3
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3211_low_3
NF3211_low_3
[»] chr5 (13 HSPs)
chr5 (219-659)||(39858107-39858547)
chr5 (1-181)||(39857925-39858110)
chr5 (456-653)||(39848649-39848845)
chr5 (226-439)||(39848360-39848573)
chr5 (214-428)||(39898972-39899185)
chr5 (209-440)||(39911999-39912231)
chr5 (209-303)||(38971851-38971945)
chr5 (263-440)||(39865475-39865651)
chr5 (207-440)||(37466852-37467079)
chr5 (540-653)||(39865811-39865921)
chr5 (130-194)||(39848261-39848325)
chr5 (397-440)||(38967973-38968016)
chr5 (484-653)||(37467186-37467356)
[»] chr1 (1 HSPs)
chr1 (86-126)||(9939563-9939603)
[»] scaffold0057 (1 HSPs)
scaffold0057 (89-126)||(43734-43771)
[»] chr4 (1 HSPs)
chr4 (67-111)||(54175156-54175200)


Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 219 - 659
Target Start/End: Original strand, 39858107 - 39858547
Alignment:
Q  219 taaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858107 taaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaac 39858206  T
Q  319 ttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858207 ttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctag 39858306  T
Q  419 tatgccaaactctctagcaaccatgttctatatatcacatcacaaaattcataagttataatataaattacaaaaccaaaagcataaaaaccacaagatt 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858307 tatgccaaactctctagcaaccatgttctatatatcacatcacaaaattcttaagttataatataaattacaaaaccaaaagcataaaaaccacaagatt 39858406  T
Q  519 catatgacgtatgtttttcttcttcctactaaagcattgtgatttttatatttcagaactgtatttaaaataattgtttcctatatgaggattcatctaa 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39858407 catatgacgtatgtttttcttcttcctactaaagcattgtgatttttatatttcagaactgtatttaaaataattgtttcctatatgaggattcatctaa 39858506  T
Q  619 aataatgattttctcttaagcagttcacaaactaattaacc 659  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39858507 aataatgattttctcttaagcagttcacaaactaattaacc 39858547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 39857925 - 39858110
Alignment:
Q  1 aaattaagcaccctcacaagcattaagggnnnnnnn-ctatgggatccaaaaacaatcaacatagagaaagggcagcccggtttgataaagctcccgcat 99  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39857925 aaattaagcaccctcacaagcattaagggaaaaaaaactatgggatccaaaaacaatcaatatagagaaagggcagcccggtttgataaagctcccgcat 39858024  T
Q  100 atgcag----ggtccgagaggggggtcccacaattaagtatcaacttgatatagatgtcatgagcagattcaacattaaacataaa 181  Q
    ||||||    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39858025 atgcaggcagggtccgagaggggggtcccacaattaagtatcagcttgatatagatgtcatgagcagattcaacattaaacataaa 39858110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 456 - 653
Target Start/End: Original strand, 39848649 - 39848845
Alignment:
Q  456 catcacaaaattcataagttataatataaattacaaaaccaaaagcataaaaaccacaagattcatatgacgtatgtttttcttcttcctactaaagcat 555  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||    
T  39848649 catcacataattcataagttataatataaattacaaaac-aaatgcataaaaaccacaagattcgtgtgacgtatgttgttcttcttccaactaaagcat 39848747  T
Q  556 tgtgatttttatatttcagaactgtatttaaaataattgtttcctatatgaggattcatctaaaataatga--ttttctcttaagcagttcacaaactaa 653  Q
    |||||||||||||||| || | ||||||||||||||||||||||  ||||| ||| |||||||||||||||  ||||||||||| | |||||||||||||    
T  39848748 tgtgatttttatattttagtattgtatttaaaataattgtttcc--tatgacgatgcatctaaaataatgattttttctcttaatcggttcacaaactaa 39848845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 226 - 439
Target Start/End: Original strand, 39848360 - 39848573
Alignment:
Q  226 caacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaacttacaga 325  Q
    |||||| ||||||||||||||||||||| ||||| |||| ||| || |||||||||||||||||||||||||  |||||||||| |  |||| |||||||    
T  39848360 caacaatcagagatgaaaaagtcataaattatgatgcttaaagcggctatatgagcaaaacaatattgaaaagtttcaagcaattttgtgaatttacaga 39848459  T
Q  326 ttttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctagtatgcca 425  Q
    || |||||| ||||||| ||||||| ||||| |||||||| |||||  |||| ||||||||| ||| | |||||||||||||||||||||| ||||||||    
T  39848460 ttgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgctggaattgagctggtatgcca 39848559  T
Q  426 aactctctagcaac 439  Q
    |||||| |||||||    
T  39848560 aactctttagcaac 39848573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 214 - 428
Target Start/End: Original strand, 39898972 - 39899185
Alignment:
Q  214 ttgcctaaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttca-agcaatctc 312  Q
    |||||||||| |||| ||||| | | ||||||||||||||||| |||||||||||||  ||| ||||||||  ||||||||||  ||||| ||  ||||     
T  39898972 ttgcctaaaagccaaaaaccaaaaacgaaaaagtcataaaataagaagcttgaagggagtatgtgagcaaataaatattgaaaggcttcatag--atctg 39899069  T
Q  313 atgaacttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattg 412  Q
    ||||| |||||| |  ||||||||| |||| ||||||||||||| | |||||| |||||  ||||  |||||||| ||| | ||||||||||||||||||    
T  39899070 atgaatttacaggtcctgcttcctcaatgtttgtcaaaggccgagaaggtcgacatgtatggttttgacgcttttcccataaccaaaagcgctggaattg 39899169  T
Q  413 agctagtatgccaaac 428  Q
    |||| |||||||||||    
T  39899170 agctggtatgccaaac 39899185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 209 - 440
Target Start/End: Original strand, 39911999 - 39912231
Alignment:
Q  209 aacatttgcctaaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaa--cttca-ag 305  Q
    ||||||| ||||||| | ||||| |||| ||||||| |||| | |||| |||||||||||||| ||||||||||||| |||||| |||||  ||||| ||    
T  39911999 aacattttcctaaaagcaaacaatcagaaatgaaaaggtcacagaataagaagcttgaagggggtatatgagcaaaataatattcaaaaaagcttcatag 39912098  T
Q  306 caatctcatgaacttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgct 405  Q
      ||||||| || |||||| |  ||||||||| ||||||||||| |||||| |||| |||||||||  ||||| |||||||  ||| | |||||||||||    
T  39912099 --atctcataaatttacaggtgctgcttcctcaatgtatgtcaatggccgaaatggacgatatgtatggtttagacgctttgcccatagccaaaagcgct 39912196  T
Q  406 ggaattgagctagtatgccaaactctctagcaacc 440  Q
    ||||| ||||  ||||||| |||||| | ||||||    
T  39912197 ggaatcgagccggtatgccgaactctttggcaacc 39912231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 38971945 - 38971851
Alignment:
Q  209 aacatttgcctaaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttca 303  Q
    |||| ||||||||||||||||||||||| |  |||||||||||||||| |||| ||||||||| |||||||||||||  |||||||||| |||||    
T  38971945 aacacttgcctaaaacccaacaaccagaaacaaaaaagtcataaaataagaagtttgaagggggtatatgagcaaaatcatattgaaaagcttca 38971851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 263 - 440
Target Start/End: Original strand, 39865475 - 39865651
Alignment:
Q  263 ttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaacttacagattttgcttcctcgatgtatgtcaaaggccgatatggt 362  Q
    ||||||||| ||||| ||||||| |||||||| || |||||||  |||| ||||| |||||| |  ||||||||| |||  |||||| || ||| ||||     
T  39865475 ttgaagggg-tatatcagcaaaataatattgataagcttcaagagatcttatgaatttacaggtcctgcttcctcaatgcgtgtcaacggacgaaatgga 39865573  T
Q  363 cgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctagtatgccaaactctctagcaacc 440  Q
    ||| ||||| ||||| ||||||||    | | |||||||||||||||||||||| |||||| ||||||| ||||||||    
T  39865574 cgacatgtatcgttttcacgctttgcaaatacccaaaagcgctggaattgagctggtatgcaaaactctttagcaacc 39865651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 207 - 440
Target Start/End: Original strand, 37466852 - 37467079
Alignment:
Q  207 ccaacatttgcctaaaacccaacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagc 306  Q
    ||||||||||||||||| ||||||    || ||||||| |||  |||||| |||||||||| |   |||||||| ||||  |||| || |||||| ||||    
T  37466852 ccaacatttgcctaaaagccaaca----gacatgaaaaggtcgcaaaataagaagcttgaaag---tatatgagaaaaatgatatcgataaactttaagc 37466944  T
Q  307 aatctcatg-aacttacagattttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgct 405  Q
    ||  ||||| |||||||||||| ||||||||| || | |||||| || ||||  || |||||||||  ||||  |||||||  ||| | |||||||||||    
T  37466945 aagatcatggaacttacagattgtgcttcctcaatttgtgtcaatggacgattaggacgatatgtatggttttgacgctttgcccatagccaaaagcgct 37467044  T
Q  406 ggaattgagctagtatgccaaactctctagcaacc 440  Q
    |||||||| |  ||||||| |||||| ||||||||    
T  37467045 ggaattgaacaggtatgccgaactctttagcaacc 37467079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 653
Target Start/End: Original strand, 39865811 - 39865921
Alignment:
Q  540 cttcctactaaagcattgtgatttttatatttcagaactgtatttaaaataattgtttcctatatgaggattcatctaaaataatgattttctcttaagc 639  Q
    ||||| ||||||||||  ||||||| |||||| || | ||  |||||||||||||||| |||||  ||||| |||||||||||||||||||||||  |||    
T  39865811 cttccaactaaagcatcatgatttt-atatttaagtattgattttaaaataattgttttctata--aggatgcatctaaaataatgattttctctatagc 39865907  T
Q  640 agttcacaaactaa 653  Q
    ||||||||||||||    
T  39865908 agttcacaaactaa 39865921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 39848261 - 39848325
Alignment:
Q  130 taagtatcaacttgatatagatgtcatgagcagattcaacattaaacataaatgaggggtaaaag 194  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||    
T  39848261 taagtatcagcttgatataaatgacatgagcagattcaacatgtaacataaatgaggggtaaaag 39848325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 397 - 440
Target Start/End: Complemental strand, 38968016 - 38967973
Alignment:
Q  397 aaaagcgctggaattgagctagtatgccaaactctctagcaacc 440  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    
T  38968016 aaaagcgctggaattgagctggtatgccaaactctttagcaacc 38967973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 484 - 653
Target Start/End: Original strand, 37467186 - 37467356
Alignment:
Q  484 aattacaaaaccaaaagcataaaaacca-caagattcatatgacgtatgtttttcttcttcctactaaagcattgtgatttttatatttcagaactgtat 582  Q
    |||||||||| |||||||||||| ||||  |||||||||| ||| | | ||||||||||||| | |||| | |  ||| |||||||||| || ||||| |    
T  37467186 aattacaaaatcaaaagcataaagaccataaagattcataagacctgt-tttttcttcttccaaataaatcttcatgaattttatattttagtactgttt 37467284  T
Q  583 tt-aaaataattgtttcctatatgaggattcatctaaaataatgattttctcttaagcagttcacaaactaa 653  Q
    || |||||||| |||| ||||  |||||| || | ||||||||   || ||| | |||||||||||||||||    
T  37467285 ttaaaaataatagttttctatgagaggatgcaacaaaaataatagcttgctccttagcagttcacaaactaa 37467356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 9939603 - 9939563
Alignment:
Q  86 taaagctcccgcatatgcagggtccgagaggggggtcccac 126  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  9939603 taaagctcccgcatacgcagggtccgagaagggggtcccac 9939563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 43771 - 43734
Alignment:
Q  89 agctcccgcatatgcagggtccgagaggggggtcccac 126  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  43771 agctcccgcatatgcagggtccgagaaaggggtcccac 43734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 54175200 - 54175156
Alignment:
Q  67 aaagggcagcccggtttgataaagctcccgcatatgcagggtccg 111  Q
    |||||||||||||||    ||||||||||||||||||||||||||    
T  54175200 aaagggcagcccggtgcactaaagctcccgcatatgcagggtccg 54175156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University