View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3211_low_30 (Length: 252)
Name: NF3211_low_30
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 39671620 - 39671862
Alignment:
| Q |
1 |
ccatgatttgagtcattggtgaaatcatccacttggtgaaaacatcaaccacgtgaatggtttaatgttttgttgttagcttgtggtctacttcaagaca |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39671620 |
ccatgatttgagtcatcggtgaaatcatccacttggtgaaaacatcaaccacgtgaatggtttaatgttttgttgttagcttgtggtctacttcaagaca |
39671719 |
T |
|
| Q |
101 |
cacaccaacagaatgatgaagccaatatcctcagtgatgaatcctgtggaacctaatatcgaatatcgttaagagccctaatccattaatcccaaaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
39671720 |
cacaccaacagaatgatgaagccaatatcctcggtgatgaatcctgtggaacctaatatcgaatatcgttaaaagccctaatccattaatcacaaaagaa |
39671819 |
T |
|
| Q |
201 |
agcacatcagtacaagaagacaaatattaatcctgcctttgctt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39671820 |
agcacatcagtacaagaagacaaatatt-atcctgcctttgctt |
39671862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University