View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3211_low_31 (Length: 248)

Name: NF3211_low_31
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3211_low_31
NF3211_low_31
[»] chr4 (3 HSPs)
chr4 (143-240)||(49771662-49771759)
chr4 (143-240)||(38167618-38167714)
chr4 (143-240)||(38166616-38166713)
[»] chr3 (5 HSPs)
chr3 (143-240)||(32635713-32635810)
chr3 (147-240)||(32637034-32637127)
chr3 (143-240)||(40476340-40476437)
chr3 (143-236)||(40477217-40477310)
chr3 (175-231)||(37846435-37846491)
[»] chr1 (1 HSPs)
chr1 (143-240)||(23469812-23469909)
[»] chr8 (2 HSPs)
chr8 (188-240)||(9464318-9464370)
chr8 (171-240)||(9465178-9465247)
[»] chr5 (1 HSPs)
chr5 (188-241)||(15599883-15599936)


Alignment Details
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 49771662 - 49771759
Alignment:
Q  143 ttaattgaaataaatgccacatggatgccaagtggacaaagtgacacagttagctaatgccatttatgcaaaaatgcgccaaatcatcactaaagtgg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||    
T  49771662 ttaattgaaataaatgccacatggatgccaagtggacaaagtagcacagttagctaatgccatgtatgcaaaaatgcaccaaatcatcagtaaagtgg 49771759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 38167618 - 38167714
Alignment:
Q  143 ttaattgaaataaatgccacatggatgccaagtggacaaagtgacacagttagctaatgccatttatgcaaaaatgcgccaaatcatcactaaagtgg 240  Q
    |||||||||||||||| ||  |||||||||||||||||||||||||| || | |||||| ||| |||||||||||| |||||||||||| | ||||||    
T  38167618 ttaattgaaataaatgtcatgtggatgccaagtggacaaagtgacac-gtcaactaatgtcatgtatgcaaaaatgtgccaaatcatcagttaagtgg 38167714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 38166713 - 38166616
Alignment:
Q  143 ttaattgaaataaatgccacatggatgccaagtggacaaagtgacacagttagctaatgccatttatgcaaaaatgcgccaaatcatcactaaagtgg 240  Q
    |||||||||||||||||||| |||||| |||||||||||||||| |  || |||||| | ||  ||||||||||||||| |||||||||  |||||||    
T  38166713 ttaattgaaataaatgccacgtggatggcaagtggacaaagtgatatggtaagctaacgacaagtatgcaaaaatgcgctaaatcatcatgaaagtgg 38166616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 32635810 - 32635713
Alignment:
Q  143 ttaattgaaataaatgccacatggatgccaagtggacaaagtgacacagttagctaatgccatttatgcaaaaatgcgccaaatcatcactaaagtgg 240  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||| ||||||||    
T  32635810 ttaattgaaataaatgtcacgtggatgccaagtggacaaagtgacacagttagctaatgccacatatgtaaaaatgcgccaaatcatcaataaagtgg 32635713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 32637034 - 32637127
Alignment:
Q  147 ttgaaataaatgccacatggatgccaagtggacaaagtgacacagttagctaatgccatttatgcaaaaatgcgccaaatcatcactaaagtgg 240  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||| ||||||||    
T  32637034 ttgaaataaatgccacgtggatgctaagtggacaaagtgacacagtcagctaatgccacatatgcaaaaatgcgccaaatcatcaataaagtgg 32637127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 40476437 - 40476340
Alignment:
Q  143 ttaattgaaataaatgccacatggatgccaagtggacaaagtgacacagttagctaatgccatttatgcaaaaatgcgccaaatcatcactaaagtgg 240  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||  |||||||||||| ||||||| |||| ||||||||    
T  40476437 ttaattaaaataaatgccacatggatgccaagtggataaagtgacacagtcagctaatgccacgtatgcaaaaatgtgccaaattatcaataaagtgg 40476340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 40477217 - 40477310
Alignment:
Q  143 ttaattgaaataaatgccacatggatgccaagtggacaaagtgacacagttagctaatgccatttatgcaaaaatgcgccaaatcatcactaaa 236  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||  |||||||| | |||||||||||||| ||||    
T  40477217 ttaattgaaataaatgtcacatggatgccaagtggacaaagtgacatagtcaactaatgccacatatgcaaataagcgccaaatcatcagtaaa 40477310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 231
Target Start/End: Original strand, 37846435 - 37846491
Alignment:
Q  175 tggacaaagtgacacagttagctaatgccatttatgcaaaaatgcgccaaatcatca 231  Q
    |||||||||| ||||||| |||||||||||  |||||||||| | | ||||||||||    
T  37846435 tggacaaagtaacacagtcagctaatgccacatatgcaaaaaagtgacaaatcatca 37846491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 23469812 - 23469909
Alignment:
Q  143 ttaattgaaataaatgccacatggatgccaagtggacaaagtgacacagttagctaatgccatttatgcaaaaatgcgccaaatcatcactaaagtgg 240  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||  ||||||||||||||||||||||||| | ||||||    
T  23469812 ttaattgaaataaatgccacgtggatgccaagtgggcaaagtgacacagtcagctaatgccacatatgcaaaaatgcgccaaatcatcaatgaagtgg 23469909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 9464370 - 9464318
Alignment:
Q  188 acagttagctaatgccatttatgcaaaaatgcgccaaatcatcactaaagtgg 240  Q
    ||||| |||||||||||| |||||||||||| |||||||||||  ||||||||    
T  9464370 acagtgagctaatgccatgtatgcaaaaatgtgccaaatcatccgtaaagtgg 9464318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 9465178 - 9465247
Alignment:
Q  171 caagtggacaaagtgacacagttagctaatgccatttatgcaaaaatgcgccaaatcatcactaaagtgg 240  Q
    |||||||||||| |||| |||| ||||||||| |  ||| |||||||| ||| |||||||| ||||||||    
T  9465178 caagtggacaaaatgacgcagtcagctaatgctacgtatacaaaaatgtgccgaatcatcaataaagtgg 9465247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 15599936 - 15599883
Alignment:
Q  188 acagttagctaatgccatttatgcaaaaatgcgccaaatcatcactaaagtgga 241  Q
    ||||| ||| ||||| || || |||||||||||||||||||||| |||||||||    
T  15599936 acagtcagcgaatgctatgtaggcaaaaatgcgccaaatcatcagtaaagtgga 15599883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University