View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3211_low_32 (Length: 245)

Name: NF3211_low_32
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3211_low_32
NF3211_low_32
[»] chr2 (23 HSPs)
chr2 (1-239)||(37986751-37986993)
chr2 (146-225)||(23354646-23354725)
chr2 (146-233)||(38919184-38919271)
chr2 (148-213)||(25544479-25544544)
chr2 (146-225)||(23354989-23355068)
chr2 (101-204)||(24011043-24011146)
chr2 (150-216)||(10535757-10535823)
chr2 (162-232)||(12748663-12748733)
chr2 (185-225)||(12464882-12464922)
chr2 (117-201)||(11307963-11308053)
chr2 (83-164)||(4207909-4207989)
chr2 (142-219)||(19573970-19574047)
chr2 (187-232)||(38117194-38117239)
chr2 (193-232)||(26769490-26769529)
chr2 (185-232)||(42205868-42205915)
chr2 (187-225)||(15972859-15972897)
chr2 (176-225)||(10735202-10735251)
chr2 (169-222)||(12668440-12668493)
chr2 (169-225)||(12940952-12941008)
chr2 (169-225)||(18841030-18841086)
chr2 (169-225)||(20539691-20539747)
chr2 (169-217)||(30335411-30335459)
chr2 (108-152)||(41849354-41849398)
[»] chr7 (21 HSPs)
chr7 (125-225)||(4017767-4017867)
chr7 (131-219)||(38804534-38804622)
chr7 (110-213)||(7133236-7133339)
chr7 (146-240)||(29812658-29812750)
chr7 (123-226)||(23930204-23930307)
chr7 (147-225)||(43249979-43250057)
chr7 (110-204)||(5938479-5938573)
chr7 (155-204)||(23751907-23751956)
chr7 (168-225)||(30516373-30516430)
chr7 (169-225)||(27945027-27945083)
chr7 (141-204)||(10230062-10230125)
chr7 (165-219)||(23128674-23128728)
chr7 (185-222)||(927870-927907)
chr7 (155-204)||(22683758-22683807)
chr7 (169-226)||(22868027-22868084)
chr7 (189-230)||(29788689-29788729)
chr7 (189-225)||(6630949-6630985)
chr7 (169-225)||(9408351-9408407)
chr7 (169-225)||(15902808-15902864)
chr7 (169-225)||(23191882-23191938)
chr7 (169-225)||(32308106-32308162)
[»] chr5 (19 HSPs)
chr5 (125-204)||(43554528-43554607)
chr5 (110-225)||(26205718-26205833)
chr5 (118-204)||(25863211-25863297)
chr5 (162-220)||(42469212-42469270)
chr5 (142-202)||(39695989-39696049)
chr5 (131-224)||(14574029-14574121)
chr5 (110-225)||(21137675-21137788)
chr5 (155-224)||(7997169-7997238)
chr5 (187-232)||(31084302-31084347)
chr5 (155-212)||(31264437-31264494)
chr5 (169-224)||(24906318-24906373)
chr5 (170-225)||(36642780-36642835)
chr5 (187-225)||(9449455-9449493)
chr5 (167-225)||(9878047-9878105)
chr5 (165-213)||(2577193-2577241)
chr5 (169-225)||(14674255-14674311)
chr5 (165-225)||(15410461-15410521)
chr5 (148-232)||(35252310-35252392)
chr5 (185-225)||(41558716-41558756)
[»] chr3 (33 HSPs)
chr3 (86-219)||(25074781-25074914)
chr3 (101-225)||(25651980-25652104)
chr3 (138-225)||(14223839-14223926)
chr3 (141-214)||(25892457-25892530)
chr3 (125-210)||(27903633-27903718)
chr3 (145-242)||(41319303-41319400)
chr3 (155-219)||(15864825-15864889)
chr3 (169-232)||(20503444-20503507)
chr3 (132-210)||(25326427-25326505)
chr3 (155-212)||(34189426-34189483)
chr3 (124-204)||(12704629-12704709)
chr3 (141-219)||(8903424-8903501)
chr3 (167-232)||(10954930-10954996)
chr3 (155-225)||(24205044-24205114)
chr3 (187-232)||(21479097-21479142)
chr3 (142-203)||(34307770-34307831)
chr3 (187-232)||(40052311-40052356)
chr3 (188-232)||(14747540-14747584)
chr3 (170-225)||(10335304-10335359)
chr3 (165-232)||(20691298-20691365)
chr3 (125-204)||(21211295-21211374)
chr3 (187-230)||(26290352-26290395)
chr3 (195-233)||(39756214-39756252)
chr3 (146-204)||(52369782-52369840)
chr3 (157-242)||(1830312-1830397)
chr3 (155-204)||(3730168-3730217)
chr3 (169-225)||(8383243-8383299)
chr3 (169-225)||(10268503-10268559)
chr3 (169-225)||(15796311-15796367)
chr3 (170-214)||(16789668-16789712)
chr3 (185-213)||(26665134-26665162)
chr3 (142-225)||(29508430-29508514)
chr3 (169-225)||(55401061-55401117)
[»] chr6 (34 HSPs)
chr6 (125-225)||(17168436-17168536)
chr6 (110-225)||(26247412-26247526)
chr6 (110-231)||(34446545-34446666)
chr6 (149-225)||(6389729-6389805)
chr6 (148-232)||(19602177-19602261)
chr6 (149-225)||(2153884-2153960)
chr6 (185-230)||(4937573-4937618)
chr6 (185-230)||(4953282-4953327)
chr6 (155-213)||(13689196-13689254)
chr6 (187-232)||(12868710-12868755)
chr6 (169-225)||(5732527-5732583)
chr6 (169-225)||(7938102-7938158)
chr6 (169-225)||(16833294-16833350)
chr6 (158-225)||(3398605-3398671)
chr6 (158-225)||(7625108-7625175)
chr6 (165-224)||(9024189-9024248)
chr6 (124-198)||(4420156-4420225)
chr6 (156-218)||(6299505-6299567)
chr6 (156-218)||(6306315-6306377)
chr6 (187-225)||(8777008-8777046)
chr6 (179-225)||(10760868-10760914)
chr6 (187-232)||(5626731-5626776)
chr6 (155-204)||(12235522-12235571)
chr6 (171-224)||(17422274-17422327)
chr6 (181-225)||(677823-677867)
chr6 (169-225)||(7996395-7996451)
chr6 (169-225)||(8022350-8022406)
chr6 (193-225)||(8365560-8365592)
chr6 (169-225)||(10770691-10770747)
chr6 (169-225)||(12696310-12696366)
chr6 (169-225)||(16766683-16766739)
chr6 (169-225)||(17841606-17841662)
chr6 (187-223)||(32313392-32313428)
chr6 (169-225)||(34595120-34595176)
[»] chr1 (19 HSPs)
chr1 (101-204)||(42004897-42004999)
chr1 (137-204)||(6936385-6936452)
chr1 (169-232)||(22881633-22881696)
chr1 (85-203)||(20157283-20157401)
chr1 (139-213)||(40747760-40747834)
chr1 (110-232)||(17831486-17831611)
chr1 (188-232)||(3490426-3490470)
chr1 (188-232)||(6427440-6427484)
chr1 (169-225)||(46348400-46348456)
chr1 (162-225)||(36878447-36878510)
chr1 (187-225)||(37598818-37598856)
chr1 (157-230)||(39101187-39101258)
chr1 (187-224)||(609493-609530)
chr1 (187-224)||(10572624-10572661)
chr1 (159-212)||(45660776-45660829)
chr1 (169-225)||(1815243-1815299)
chr1 (169-229)||(24577203-24577263)
chr1 (169-225)||(38503306-38503362)
chr1 (193-225)||(48040503-48040535)
[»] chr4 (17 HSPs)
chr4 (123-219)||(24343499-24343595)
chr4 (101-224)||(20743221-20743350)
chr4 (110-204)||(3144611-3144704)
chr4 (123-225)||(7012052-7012160)
chr4 (110-230)||(31243500-31243626)
chr4 (83-218)||(53381527-53381658)
chr4 (146-219)||(6273936-6274009)
chr4 (124-204)||(18513213-18513293)
chr4 (141-229)||(23386127-23386216)
chr4 (169-225)||(16303283-16303339)
chr4 (162-202)||(49659533-49659573)
chr4 (187-220)||(12895309-12895342)
chr4 (137-225)||(20521836-20521922)
chr4 (193-225)||(19482654-19482686)
chr4 (169-225)||(21945489-21945545)
chr4 (169-225)||(36635310-36635366)
chr4 (162-210)||(50848313-50848361)
[»] chr8 (21 HSPs)
chr8 (110-219)||(14513132-14513241)
chr8 (146-213)||(13845232-13845299)
chr8 (142-225)||(3658133-3658216)
chr8 (147-226)||(44067501-44067580)
chr8 (155-225)||(39820415-39820485)
chr8 (155-204)||(35431143-35431192)
chr8 (170-230)||(11815810-11815870)
chr8 (148-231)||(40063933-40064014)
chr8 (162-225)||(28883888-28883951)
chr8 (142-225)||(15816113-15816202)
chr8 (155-204)||(1676719-1676768)
chr8 (169-230)||(13844613-13844674)
chr8 (169-225)||(4673442-4673498)
chr8 (169-229)||(4786355-4786415)
chr8 (120-204)||(8017493-8017577)
chr8 (160-203)||(12559114-12559157)
chr8 (187-225)||(36450789-36450827)
chr8 (151-220)||(18130531-18130600)
chr8 (149-213)||(13009490-13009554)
chr8 (187-231)||(14227202-14227246)
chr8 (169-225)||(20873055-20873111)
[»] scaffold0007 (1 HSPs)
scaffold0007 (147-225)||(225263-225341)
[»] scaffold0598 (1 HSPs)
scaffold0598 (146-225)||(8047-8126)
[»] scaffold0306 (1 HSPs)
scaffold0306 (187-225)||(13386-13424)
[»] scaffold0152 (1 HSPs)
scaffold0152 (187-225)||(21903-21941)
[»] scaffold0199 (1 HSPs)
scaffold0199 (155-204)||(1956-2005)
[»] scaffold0019 (1 HSPs)
scaffold0019 (188-233)||(71701-71746)
[»] scaffold0122 (1 HSPs)
scaffold0122 (181-233)||(7988-8040)
[»] scaffold0778 (1 HSPs)
scaffold0778 (140-214)||(4403-4477)
[»] scaffold0036 (1 HSPs)
scaffold0036 (112-150)||(35677-35715)
[»] scaffold0018 (1 HSPs)
scaffold0018 (187-225)||(178854-178892)
[»] scaffold0103 (1 HSPs)
scaffold0103 (169-225)||(51797-51853)
[»] scaffold0053 (1 HSPs)
scaffold0053 (169-225)||(8784-8840)
[»] scaffold0049 (1 HSPs)
scaffold0049 (165-201)||(56932-56968)
[»] scaffold0022 (1 HSPs)
scaffold0022 (169-225)||(90829-90885)
[»] scaffold0004 (1 HSPs)
scaffold0004 (169-225)||(92793-92849)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37986993 - 37986751
Alignment:
Q  1 tatatacagaaatagaaatgatacagctaattttttaatcttaacctttagataagnnnnnnnnnnnnnnnnnngttatcttaa----cctatgaaacat 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||    ||||||||||||    
T  37986993 tatatacagaaatagaaatgatacagctaattttttaatcttaacctttagataagtttttttatttttgttttgttatcttaatcaacctatgaaacat 37986894  T
Q  97 gaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaa 196  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37986893 gaatactcttcggattaggtttgtttccgtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttttcaa 37986794  T
Q  197 attattatttgtgtcggcgtgtcagtgtcgtgtccgagtctgt 239  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  37986793 attattatctgtgtcggcgtgtcagtgtcgtgtccgagtctgt 37986751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 23354646 - 23354725
Alignment:
Q  146 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||| |||||| || |||| |||||    
T  23354646 ccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatctgtgtcagcatgtcggtgtc 23354725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 38919271 - 38919184
Alignment:
Q  146 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccga 233  Q
    ||||||| ||||||| ||||||||||||||| || |||| ||||||||||||||||||| ||| |||| ||||  ||||| |||||||    
T  38919271 ccgacactaacacgacacctatgattacactaaactataacattttctcaaattattatctgtatcggtgtgttcgtgtcatgtccga 38919184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 25544544 - 25544479
Alignment:
Q  148 gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 213  Q
    |||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||  |||||||    
T  25544544 gacaccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcgg 25544479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 23354989 - 23355068
Alignment:
Q  146 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| ||| || |||||||||| |||| || |||||||||||||||||||||||| |||||| || |||| |||||    
T  23354989 ccgacaccgacatgacacctatgattgcactaaattatatcattttctcaaattattatctgtgtcagcatgtcggtgtc 23355068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 24011146 - 24011043
Alignment:
Q  101 actcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaatta 200  Q
    |||||||| |||| |||||| | |||||| ||||| | || || || |||||| || ||| ||||||||||||||| || ||| ||||||||||||||||    
T  24011146 actcttcggattatgtgtgtcttggtgtcggacacgcatccgtatcagacaccgacgcgacacctatgattacactaaattatgtcattttctcaaatta 24011047  T
Q  201 ttat 204  Q
    ||||    
T  24011046 ttat 24011043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 10535757 - 10535823
Alignment:
Q  150 caccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgt 216  Q
    ||||||||||| || |||||||||||| || ||| ||||||||||||||||||||  ||||||||||    
T  10535757 caccaacacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgt 10535823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 12748733 - 12748663
Alignment:
Q  162 acctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    ||||||||||||||| || ||| ||||||||||||||||||||   |||| ||||||| ||||||||||||    
T  12748733 acctatgattacactgaactatgtcattttctcaaattattatccatgtcagcgtgtccgtgtcgtgtccg 12748663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 12464882 - 12464922
Alignment:
Q  185 tcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  12464882 tcattttctcaaattattattggtgtcggcgtgtcagtgtc 12464922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 11307963 - 11308053
Alignment:
Q  117 gtgtttcggtgtcagacactcgtcggtgtcc------gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattat 201  Q
    ||||||||||||| ||||| |||||||||||      |||||| |||||| ||||||||||||||| || ||| ||||||| |||||||||    
T  11307963 gtgtttcggtgtcggacacgcgtcggtgtccaacaccgacaccgacacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 4207989 - 4207909
Alignment:
Q  83 aacctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacc 164  Q
    ||||||||||||||||| |||||||| ||||   |||||||||||||  ||||  ||| |||||||||||| ||||||||||    
T  4207989 aacctatgaaacatgaacactcttcggattaaacgtgtttcggtgtcgaacacgtgtc-gtgtccgacaccgacacgatacc 4207909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 219
Target Start/End: Complemental strand, 19574047 - 19573970
Alignment:
Q  142 gtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 219  Q
    |||||||||||| |||||  |||||| |||||||| || ||| | ||||||| ||||||||||  |||||||||||||    
T  19574047 gtgtccgacaccgacacgccacctataattacactgaattatgttattttcttaaattattatcggtgtcggcgtgtc 19573970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 38117194 - 38117239
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  38117194 attttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccg 38117239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 26769529 - 26769490
Alignment:
Q  193 tcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  26769529 tcaaattattagttgtgtcggcgtgtctgtgtcgtgtccg 26769490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 42205868 - 42205915
Alignment:
Q  185 tcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    ||||||||||||||||||||| |||| ||| ||||| |||||||||||    
T  42205868 tcattttctcaaattattattggtgttggcatgtcaatgtcgtgtccg 42205915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 15972897 - 15972859
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  15972897 attttttcaaattattaattgtgtcggcgtgtcagtgtc 15972859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 10735251 - 10735202
Alignment:
Q  176 tcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| |||||||| |||||||||||| |||||| ||||||| ||||    
T  10735251 tcaaatatttcattttcccaaattattattggtgtcgtcgtgtcaatgtc 10735202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 12668440 - 12668493
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagt 222  Q
    |||||||| || ||| ||||||| ||||||||||| || |||||||||||||||    
T  12668440 attacactgaattatgtcattttttcaaattattagttatgtcggcgtgtcagt 12668493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 12940952 - 12941008
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||||| ||||| ||||||||||| |||||||  ||||||||||||    
T  12940952 attacactgaattatatgattttttcaaattattagttgtgtcaacgtgtcagtgtc 12941008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 18841030 - 18841086
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| ||||||||||| ||||||| |||||||||||||    
T  18841030 attacacttaattatgtaattttttcaaattattagttgtgtcagcgtgtcagtgtc 18841086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 20539691 - 20539747
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||||| ||||| |||||||||||  ||||||| ||||||||||||    
T  20539691 attacactaaattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtc 20539747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 30335459 - 30335411
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtg 217  Q
    |||||||| || ||| ||||||| ||||||||||| |||||||||||||    
T  30335459 attacactaaattatgtcattttttcaaattattagttgtgtcggcgtg 30335411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 41849398 - 41849354
Alignment:
Q  108 gaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacac 152  Q
    |||||||| ||||  ||||||||||||| ||||||||||||||||    
T  41849398 gaattaggcgtgtcgcggtgtcagacacgcgtcggtgtccgacac 41849354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 4017767 - 4017867
Alignment:
Q  125 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 224  Q
    ||||||||||| |||||||||||||||||||||||| || |||||||||||| || |||||| |||||||||||||||||  ||||||||||||| ||||    
T  4017767 gtgtcagacacacgtcggtgtccgacaccaacacgacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcggcgtgtcggtgt 4017866  T
Q  225 c 225  Q
    |    
T  4017867 c 4017867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 38804534 - 38804622
Alignment:
Q  131 gacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 219  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||  | ||| ||||||||| ||||||||||  |||||||||||||    
T  38804534 gacacacgtcggtgtccgacaccaacacgacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcggcgtgtc 38804622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 7133236 - 7133339
Alignment:
Q  110 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 209  Q
    |||||||||||  | ||||| ||||| ||||||||||||||||| ||||   ||||||||||||||| || ||| ||||||||||||||||| || ||||    
T  7133236 attaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattatgtcattttctcaaattatcatctgtg 7133335  T
Q  210 tcgg 213  Q
    ||||    
T  7133336 tcgg 7133339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 29812658 - 29812750
Alignment:
Q  146 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccgagtctgtg 240  Q
    |||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||  | ||||  ||||| |||||||||||| |||||||    
T  29812658 ccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcg--gtgtccgtgtcgtgtccgtgtctgtg 29812750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 23930307 - 23930204
Alignment:
Q  123 cggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagt 222  Q
    ||||||| ||||| | ||||| ||||||||| |||| | ||||||||||||||| || ||| |||||||||||||||| |||  ||||||  |||||| |    
T  23930307 cggtgtcggacacgcatcggtatccgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgtgtcgatgtgtcaat 23930208  T
Q  223 gtcg 226  Q
    ||||    
T  23930207 gtcg 23930204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 43250057 - 43249979
Alignment:
Q  147 cgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||| |||||| || ||| ||||||||  | ||| ||||||||||||||||||||  |||||||||||||||||||    
T  43250057 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtc 43249979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 5938573 - 5938479
Alignment:
Q  110 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    |||||||||||| ||||||| ||||| | |||||||| |||||| |||| | |||||| |||| ||| || ||| | ||||| ||||||||||||    
T  5938573 attaggtgtgttccggtgtcggacacgcatcggtgtctgacaccgacacaacacctataattatactgaattatgttattttatcaaattattat 5938479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 23751956 - 23751907
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||    
T  23751956 acacgacacctatgattacactaaattatatcattttatcaaattattat 23751907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 30516373 - 30516430
Alignment:
Q  168 gattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||| | || |||||||||||||||||||||| || |||||| ||||||||||||    
T  30516373 gattacattgaattatatcattttctcaaattattgttagtgtcgacgtgtcagtgtc 30516430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 27945083 - 27945027
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||||||||||||||| | |||||||||||||||||||    
T  27945083 attacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtc 27945027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 10230062 - 10230125
Alignment:
Q  141 ggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    |||||||||||||||||||| | ||||  ||||||| || ||| |||||| |||||||||||||    
T  10230062 ggtgtccgacaccaacacgacatctatacttacactgaattatgtcatttcctcaaattattat 10230125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 23128674 - 23128728
Alignment:
Q  165 tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 219  Q
    |||||||||||| || |||||  |||||||||||||||||| ||||| |||||||    
T  23128674 tatgattacactgaattatatggttttctcaaattattattggtgtcagcgtgtc 23128728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 927870 - 927907
Alignment:
Q  185 tcattttctcaaattattatttgtgtcggcgtgtcagt 222  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  927870 tcattttctcaaattattattagtgtcgacgtgtcagt 927907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 22683758 - 22683807
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    |||||| |||||||||| |||| || |||||||| |||||||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattat 22683807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 22868084 - 22868027
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcg 226  Q
    |||||||| || ||| | ||||||||| ||||||| | ||||||||||||||||||||    
T  22868084 attacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtcg 22868027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 29788689 - 29788729
Alignment:
Q  189 tttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 230  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  29788689 tttctcaaattattatt-gtgtcgacgtgtcagtgtcgtgtc 29788729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 6630949 - 6630985
Alignment:
Q  189 tttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||||||||||| | |||||||||||||||||||    
T  6630949 tttctcaaattattagtggtgtcggcgtgtcagtgtc 6630985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 9408351 - 9408407
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| ||||||||||| ||||||||| |||||||||||    
T  9408351 attacactaaattatgtgattttttcaaattattaattgtgtcggtgtgtcagtgtc 9408407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 15902864 - 15902808
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| ||||||||||||| |||||||| ||||||||||    
T  15902864 attacactaaattatgtgattttatcaaattattattggtgtcggcatgtcagtgtc 15902808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 23191938 - 23191882
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| |||||| | |||||||||||||||||   |||||||||| ||||||||    
T  23191938 attacactgaaatatgtgattttctcaaattattagcggtgtcggcgtatcagtgtc 23191882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 32308162 - 32308106
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | |||||||||||||||||   |||||||||||||||||||    
T  32308162 attacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 32308106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 43554607 - 43554528
Alignment:
Q  125 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    ||||| ||||| ||||||||||||||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  43554607 gtgtcggacacgcgtcggtgtccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 26205718 - 26205833
Alignment:
Q  110 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 209  Q
    |||| ||||||  ||||||| || || ||| |||||||||||||||||||| ||||||||||||||| || ||| ||||||||||||| | ||||  ||     
T  26205718 attacgtgtgtcccggtgtcggatacgcgttggtgtccgacaccaacacgacacctatgattacactgaattatgtcattttctcaaaattttatcggta 26205817  T
Q  210 tcggcgtgtcagtgtc 225  Q
    ||| ||||||||||||    
T  26205818 tcgacgtgtcagtgtc 26205833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 25863297 - 25863211
Alignment:
Q  118 tgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    |||| ||||||||||||| | |||||| |||||||  |||||| || ||| |||||||| || ||||||||||||||||||||||||    
T  25863297 tgttccggtgtcagacacgcatcggtgcccgacactgacacgacacttataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 42469270 - 42469212
Alignment:
Q  162 acctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtca 220  Q
    ||||||||||||||| |||||| ||||||||||||||||||||  ||||||||||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatccgtgtcggcgtgtca 42469212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 39695989 - 39696049
Alignment:
Q  142 gtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattatt 202  Q
    ||||| |||||| |||||| ||||||||||||||| || ||||||||||||||||||||||    
T  39695989 gtgtcggacaccgacacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 14574029 - 14574121
Alignment:
Q  131 gacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 224  Q
    ||||| |||||| |||||||||  |||||| |||||| |||||||| || ||||||||||  ||||||||||| | ||||||||||||| ||||    
T  14574029 gacacgcgtcggcgtccgacactgacacga-acctataattacactgaattatatcatttcatcaaattattactcgtgtcggcgtgtcggtgt 14574121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 225
Target Start/End: Complemental strand, 21137788 - 21137675
Alignment:
Q  110 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 209  Q
    |||||||||||  ||||||| ||||| ||| ||||||||||  | |||||| |||||||||| |||| || ||  ||||||||||| |||||||    ||    
T  21137788 attaggtgtgtcccggtgtcggacacgcgttggtgtccgac--cgacacgacacctatgatttcactgaattacgtcattttctcagattattaccgatg 21137691  T
Q  210 tcggcgtgtcagtgtc 225  Q
    ||||||||||||||||    
T  21137690 tcggcgtgtcagtgtc 21137675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 7997169 - 7997238
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 224  Q
    |||||| || ||| ||||||||  | ||||||||||||||||||||||||  |||| |||||||||||||    
T  7997169 acacgacacttataattacactgtattatatcattttctcaaattattatccgtgttggcgtgtcagtgt 7997238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 31084347 - 31084302
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  31084347 attttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccg 31084302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 31264494 - 31264437
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcg 212  Q
    |||||| || |||||||||||| || ||| ||||||||||||||||||| ||||||||    
T  31264494 acacgacacttatgattacactgaattatgtcattttctcaaattattacttgtgtcg 31264437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 24906318 - 24906373
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 224  Q
    |||||||| || ||| ||||||| |||||||||||| ||||| |||||||||||||    
T  24906318 attacactgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgt 24906373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 36642780 - 36642835
Alignment:
Q  170 ttacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||| |||||| ||| ||| |||||||||||  ||||||||||||||||||||    
T  36642780 ttacactaaaatatgtcactttttcaaattattaactgtgtcggcgtgtcagtgtc 36642835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 9449493 - 9449455
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  9449493 attttctcaaattattattggtgtcggcgtgccagtgtc 9449455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 9878047 - 9878105
Alignment:
Q  167 tgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| |||| ||  |||| |||||||||||||||| |||||| ||||||||||||    
T  9878047 tgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtc 9878105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 2577193 - 2577241
Alignment:
Q  165 tatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 213  Q
    |||||||||||| || ||| ||||||||||||||||||||  |||||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtcgg 2577241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 14674311 - 14674255
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  14674311 attacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 14674255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 15410461 - 15410521
Alignment:
Q  165 tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||||||| ||  |||| ||||||| |||||||||   |||||||||||||||||||    
T  15410461 tatgattacactgaatcatataattttcttaaattattagcggtgtcggcgtgtcagtgtc 15410521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 35252310 - 35252392
Alignment:
Q  148 gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    |||||||||| || || |||||||||| | || ||| | |||||||||||| |||||| ||||||||||||| ||||| ||||||    
T  35252310 gacaccaacatgacacatatgattacatt-aactatgtaattttctcaaat-attattggtgtcggcgtgtccgtgtcatgtccg 35252392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 41558716 - 41558756
Alignment:
Q  185 tcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||||||||||||||||||||||   |||||||||||    
T  41558716 tcattttctcaaattattatttgtgtcaatgtgtcagtgtc 41558756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 25074914 - 25074781
Alignment:
Q  86 ctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatat 185  Q
    ||||||| || ||| |||| ||| |||||||||||  | ||||| ||||| ||| |||||| |||||| |||| |  ||||||||||||||||| ||| |    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatgt 25074815  T
Q  186 cattttctcaaattattatttgtgtcggcgtgtc 219  Q
    |||||||||||||||||||  |||||||||||||    
T  25074814 cattttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 25651980 - 25652104
Alignment:
Q  101 actcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaatta 200  Q
    |||||||| ||||||||||| ||||||||  ||||  |||||||||| ||||  |||| | |||||| | |||||| || ||||||||||||||||||||    
T  25651980 actcttcggattaggtgtgtctcggtgtcgaacacgtgtcggtgtccaacactgacacaacacctataactacactgaattatatcattttctcaaatta 25652079  T
Q  201 ttatttgtgtcggcgtgtcagtgtc 225  Q
    ||||  |||| ||||||| ||||||    
T  25652080 ttatccgtgttggcgtgttagtgtc 25652104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 14223839 - 14223926
Alignment:
Q  138 gtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||||| |||||| |||||| || ||||| |||||| || |||||| ||||||||||||||||| |||||||||||||| |||||    
T  14223839 gtcggtgtcggacaccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatctgtgtcggcgtgtcggtgtc 14223926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 25892530 - 25892457
Alignment:
Q  141 ggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggc 214  Q
    ||||||||||||  |||||| ||||||||||||||| || ||||||||||||| |||||||||||||| |||||    
T  25892530 ggtgtccgacactgacacgacacctatgattacactgaattatatcattttcttaaattattatttgtttcggc 25892457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 27903718 - 27903633
Alignment:
Q  125 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgt 210  Q
    ||||||||||| ||||||| ||||||||| |||| | || |||||||||| | || |||||| ||||||||||||||||| |||||    
T  27903718 gtgtcagacacgcgtcggtatccgacaccgacacaacacttatgattacattaaattatatcgttttctcaaattattatctgtgt 27903633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 41319303 - 41319400
Alignment:
Q  145 tccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccgagtctgtgct 242  Q
    ||||||||| |||||| || ||  |||||| | || ||| ||||||| ||||||||||||| |||||| |||||| |||||||||| |||||||||||    
T  41319303 tccgacaccgacacgacacatacaattacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtcgtgtctgagtctgtgct 41319400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 15864889 - 15864825
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 219  Q
    |||||| ||||||||||||||| || ||||||||||| ||||||||||||  |||||||||||||    
T  15864889 acacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcggcgtgtc 15864825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 20503507 - 20503444
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    |||||||| || ||| ||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  20503507 attacactgaattatgtcattttttcaaattatttgttgtgtcggcgtgtcagtgtcgtgtccg 20503444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 25326505 - 25326427
Alignment:
Q  132 acactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgt 210  Q
    |||| |||||||||||||||||||||||| | |||| |||||||| || ||||| ||||| | |||||||||| |||||    
T  25326505 acacgcgtcggtgtccgacaccaacacgacatctataattacactaaattatattatttttttaaattattatctgtgt 25326427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 34189483 - 34189426
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcg 212  Q
    |||||| ||||| ||||||||| |||||| |||||||||||||||||||| |||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatctgtgtcg 34189426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 12704629 - 12704709
Alignment:
Q  124 ggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    |||||| ||||  ||| ||||||||||||| |||||| ||||||||||||| | || ||| ||||||| ||||||||||||    
T  12704629 ggtgtcggacatgcgttggtgtccgacaccgacacgacacctatgattacattgaattatgtcattttttcaaattattat 12704709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 8903501 - 8903424
Alignment:
Q  141 ggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 219  Q
    |||||||| || | |||||| |||||| |||||||| |||||| ||||||||||||| ||||||  |||||||||||||    
T  8903501 ggtgtccggcatcgacacgacacctataattacact-aaatatgtcattttctcaaaatattatccgtgtcggcgtgtc 8903424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 10954996 - 10954930
Alignment:
Q  167 tgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtg-tcgtgtccg 232  Q
    |||||||||| || ||| | ||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  10954996 tgattacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgttcgtgtccg 10954930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 24205044 - 24205114
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||| || ||| ||||||||  | ||| ||||||||||||||||||||  |||||||||||||||||||    
T  24205044 acacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtc 24205114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 21479142 - 21479097
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  21479142 attttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccg 21479097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 34307770 - 34307831
Alignment:
Q  142 gtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattatta 203  Q
    |||||||||||| |||||| || ||| |||||||| |||||| | |||||||||||||||||    
T  34307770 gtgtccgacaccgacacgacacttataattacactgaaatatgtgattttctcaaattatta 34307831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 40052356 - 40052311
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  40052356 attttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccg 40052311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 14747584 - 14747540
Alignment:
Q  188 ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    |||| |||||||||||  |||||||||||||||||||||||||||    
T  14747584 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccg 14747540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 10335304 - 10335359
Alignment:
Q  170 ttacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||| |||||| | | ||| ||||||||||| |||||||||||||||||||||    
T  10335304 ttacactaaaatatgtgactttttcaaattattagttgtgtcggcgtgtcagtgtc 10335359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 232
Target Start/End: Complemental strand, 20691365 - 20691298
Alignment:
Q  165 tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    |||||||||||| || ||| ||||||||||||||||||||  || ||  ||||||||||| |||||||    
T  20691365 tatgattacactgaattatgtcattttctcaaattattatcagtttctacgtgtcagtgttgtgtccg 20691298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 21211374 - 21211295
Alignment:
Q  125 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    ||||| ||||| ||||||||||  ||||| |||||| ||| || |||||||| || ||| | ||||||||||||||||||    
T  21211374 gtgtcggacacgcgtcggtgtcgaacaccgacacgacacccataattacactgaactatgtaattttctcaaattattat 21211295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 26290395 - 26290352
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 230  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||    
T  26290395 attttctcaaattattaatggtgtcggcgtgtcagtgtcttgtc 26290352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 39756252 - 39756214
Alignment:
Q  195 aaattattatttgtgtcggcgtgtcagtgtcgtgtccga 233  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  39756252 aaattattaattttgtcggcgtgtcagtgtcgtgtccga 39756214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 52369840 - 52369782
Alignment:
Q  146 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    |||||||| |||||| ||||||||||||| | || ||| | ||||||||||||||||||    
T  52369840 ccgacaccgacacgacacctatgattacattgaattatgtaattttctcaaattattat 52369782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 1830397 - 1830312
Alignment:
Q  157 acgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccgagtctgtgct 242  Q
    |||| ||||||||||||||| || ||| ||||||||| |||||||||   |||||||| ||||  |||| |||||| ||| |||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattattaaaagtgtcggcatgtccttgtcatgtccgtgtccgtgct 1830312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 3730168 - 3730217
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    |||||| ||||||||||||||| || ||| ||||| ||||||||||||||    
T  3730168 acacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 8383299 - 8383243
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||||| |||||||||||||||||   |||||||||||||| ||||    
T  8383299 attacactgaattatatgattttctcaaattattagcggtgtcggcgtgtcaatgtc 8383243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 10268503 - 10268559
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  10268503 attacactaaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgtc 10268559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 15796311 - 15796367
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||||| ||||| |||||||||||  ||||||||||||||| ||||    
T  15796311 attacactgaattatatgattttttcaaattattaactgtgtcggcgtgtcattgtc 15796367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 16789668 - 16789712
Alignment:
Q  170 ttacactcaaatatatcattttctcaaattattatttgtgtcggc 214  Q
    ||||||| || ||| |||||||||||||||||||| |||||||||    
T  16789668 ttacactgaattatgtcattttctcaaattattatctgtgtcggc 16789712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 26665162 - 26665134
Alignment:
Q  185 tcattttctcaaattattatttgtgtcgg 213  Q
    |||||||||||||||||||||||||||||    
T  26665162 tcattttctcaaattattatttgtgtcgg 26665134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 29508514 - 29508430
Alignment:
Q  142 gtgtccgacaccaaca-cgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||||||||||| ||| || ||| |||||||| || ||||| ||||| ||||||||||| | || |||| |||||| ||||    
T  29508514 gtgtccgacaccaacatcgacacatataattacactgaattatatgattttttcaaattattagtggtatcggtgtgtcaatgtc 29508430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 55401117 - 55401061
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| ||||||||||| |||||||||||| ||||||||    
T  55401117 attacactaaattatgtgattttttcaaattattagttgtgtcggcgtatcagtgtc 55401061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 17168436 - 17168536
Alignment:
Q  125 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 224  Q
    |||| ||||||  ||| |||||||||||| |||||| |||||| |||||||| || ||||||||||||||||||||||||  |||| |||||||||||||    
T  17168436 gtgttagacacgtgtcagtgtccgacaccgacacgacacctattattacactaaattatatcattttctcaaattattatcagtgttggcgtgtcagtgt 17168535  T
Q  225 c 225  Q
    |    
T  17168536 c 17168536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 225
Target Start/End: Complemental strand, 26247526 - 26247412
Alignment:
Q  110 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 209  Q
    |||||||||||| |||||||||||||  || ||||||||||||| |||||| ||||||||||| ||| |||||| ||||||||| ||||||||||  ||     
T  26247526 attaggtgtgtt-cggtgtcagacacgtgttggtgtccgacaccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatccgta 26247428  T
Q  210 tcggcgtgtcagtgtc 225  Q
    || | |||||||||||    
T  26247427 tctgtgtgtcagtgtc 26247412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 231
Target Start/End: Complemental strand, 34446666 - 34446545
Alignment:
Q  110 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 209  Q
    |||||||||||  | |||||||| || |||||||||  |||||| |||||| ||||||||||||||| || ||| ||||||||||||||||||||  |||    
T  34446666 attaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacctatgattacactgaattatgtcattttctcaaattattatccgtg 34446567  T
Q  210 tcggcgtgtcagtgtcgtgtcc 231  Q
    || | ||||| ||||| |||||    
T  34446566 tcagagtgtctgtgtcatgtcc 34446545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 6389805 - 6389729
Alignment:
Q  149 acaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||| |||||| ||||||||||||||| || ||||||||||||||||||||||||  |||||||||||| ||||||    
T  6389805 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtc 6389729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 19602177 - 19602261
Alignment:
Q  148 gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    |||||| |||| ||||||||||||||||| || ||||||||||||||||||||||||  |||| || ||||| |||| |||||||    
T  19602177 gacaccgacacaatacctatgattacactgaattatatcattttctcaaattattatcagtgttggtgtgtccgtgttgtgtccg 19602261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 2153884 - 2153960
Alignment:
Q  149 acaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| ||| |||||| |||||||| || ||||||||||||| |||||||| || ||||||||||||| |||||    
T  2153884 acaccaacgcgacacctataattacactaaattatatcattttcttaaattattgttcgtgtcggcgtgtcggtgtc 2153960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 4937618 - 4937573
Alignment:
Q  185 tcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 230  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||    
T  4937618 tcatttgctcaaattattatttgtgtcggcgtgtgagtgtcgtgtc 4937573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 4953327 - 4953282
Alignment:
Q  185 tcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 230  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||    
T  4953327 tcatttgctcaaattattatttgtgtcggcgtgtgagtgtcgtgtc 4953282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 13689196 - 13689254
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 213  Q
    |||||||||||||||||||| | |||| | | |||||||||||||||||| ||||||||    
T  13689196 acacgatacctatgattacattgaaatttgttattttctcaaattattatctgtgtcgg 13689254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 12868710 - 12868755
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    ||||| |||||||||||  |||||||||||||||||||||||||||    
T  12868710 attttttcaaattattaactgtgtcggcgtgtcagtgtcgtgtccg 12868755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 5732527 - 5732583
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| |||||| | |||||||||||||||||   |||||||||||||||||||    
T  5732527 attacactaaaatatgtgattttctcaaattattaacggtgtcggcgtgtcagtgtc 5732583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 7938158 - 7938102
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||||| ||||| |||||||||||  ||||||||||||||||||||    
T  7938158 attacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtc 7938102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 16833350 - 16833294
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| ||||||||||| |||||||||||||||||||||    
T  16833350 attacactgaagtatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtc 16833294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 3398671 - 3398605
Alignment:
Q  158 cgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||| ||| |||||||| || ||||| ||||| |||||||||||  ||||||||||||||||||||    
T  3398671 cgatacttataattacactgaattatatgatttt-tcaaattattagctgtgtcggcgtgtcagtgtc 3398605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 7625175 - 7625108
Alignment:
Q  158 cgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||| ||||| |||| ||| || ||||||||||||||||||||||||  |||||| |||||| |||||    
T  7625175 cgattcctataattatactaaattatatcattttctcaaattattatccgtgtcgacgtgtcggtgtc 7625108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 9024189 - 9024248
Alignment:
Q  165 tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 224  Q
    |||||||||| | || ||| ||||||||||||||||| |||||||||| |||||| ||||    
T  9024189 tatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtccgtgt 9024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 4420156 - 4420225
Alignment:
Q  124 ggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaat 198  Q
    |||||||||||| ||| |||||| |||||||||||     ||||| ||||||| || ||||||||||||||||||    
T  4420156 ggtgtcagacacacgttggtgtctgacaccaacac-----ctatggttacactgaattatatcattttctcaaat 4420225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 6299567 - 6299505
Alignment:
Q  156 cacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgt 218  Q
    ||||| |||||| |||||| | || ||||||||||||||||||||||||   |||||||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgt 6299505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 6306377 - 6306315
Alignment:
Q  156 cacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgt 218  Q
    ||||| |||||| |||||| | || ||||||||||||||||||||||||   |||||||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgt 6306315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 8777008 - 8777046
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  8777008 attttttcaaattattagttgtgtcggcgtgtcagtgtc 8777046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 10760868 - 10760914
Alignment:
Q  179 aatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||| ||||||||||||||||||||  |||||| ||||||||||||    
T  10760868 aatatgtcattttctcaaattattatcagtgtcgacgtgtcagtgtc 10760914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 5626731 - 5626776
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    ||||||| |||  |||| ||||||||||||||||||||||||||||    
T  5626731 attttctaaaaaaattagttgtgtcggcgtgtcagtgtcgtgtccg 5626776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 12235522 - 12235571
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    |||||| ||||||||||||||| || ||| |||||||||| |||||||||    
T  12235522 acacgacacctatgattacactgaattatgtcattttctctaattattat 12235571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 17422274 - 17422327
Alignment:
Q  171 tacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgt 224  Q
    |||| |||| ||||||||||||||||||||||||  |||||| ||||| |||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtcgacgtgttagtgt 17422327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 677867 - 677823
Alignment:
Q  181 tatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||| |||||||||||||||||   |||||||||||||||||||    
T  677867 tatatgattttctcaaattattaacagtgtcggcgtgtcagtgtc 677823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 7996395 - 7996451
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||||| |||||||||||||||||   |||||||| ||||||||||    
T  7996395 attacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtc 7996451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 8022406 - 8022350
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||||| |||||||||||||||||   |||||||| ||||||||||    
T  8022406 attacactgaattatatgattttctcaaattattagcagtgtcggcatgtcagtgtc 8022350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 8365560 - 8365592
Alignment:
Q  193 tcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||||||| |||||||||||||||||||||    
T  8365560 tcaaattattagttgtgtcggcgtgtcagtgtc 8365592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 10770691 - 10770747
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| ||||||||||| |||||| ||||||||||||||    
T  10770691 attacactgaattatgtgattttttcaaattattagttgtgttggcgtgtcagtgtc 10770747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 12696366 - 12696310
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  12696366 attacactgaattatgtaattttttcaaattattagctgtgtcggcgtgtcagtgtc 12696310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 16766739 - 16766683
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  16766739 attacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 16766683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 17841606 - 17841662
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  17841606 attacactaaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 17841662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 32313428 - 32313392
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtg 223  Q
    |||||||||| |||||||| |||||||||||||||||    
T  32313428 attttctcaacttattattggtgtcggcgtgtcagtg 32313392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 34595176 - 34595120
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| ||||||||||| |||||||||||||||| ||||    
T  34595176 attacactgaattatgtgattttttcaaattattagttgtgtcggcgtgtcattgtc 34595120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 42004897 - 42004999
Alignment:
Q  101 actcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaatta 200  Q
    ||||||||||||||| |||||| | |||| ||||  ||||||||||||||||| |||| | ||||||||||||||| || ||| ||||||||||||||||    
T  42004897 actcttcgaattaggcgtgtttag-tgtcggacatgcgtcggtgtccgacaccgacacaacacctatgattacactaaattatgtcattttctcaaatta 42004995  T
Q  201 ttat 204  Q
    ||||    
T  42004996 ttat 42004999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 6936385 - 6936452
Alignment:
Q  137 cgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    ||||||||||||||||  |||||| ||||||||||||||| || ||| ||||||||||| ||||||||    
T  6936385 cgtcggtgtccgacacagacacgacacctatgattacacttaattatgtcattttctcagattattat 6936452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 22881633 - 22881696
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    |||||||| || ||| | ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  22881633 attacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtcgtgtccg 22881696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 203
Target Start/End: Original strand, 20157283 - 20157401
Alignment:
Q  85 cctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatata 184  Q
    |||||||| || | |||||| || |||||||||||| |||||||| ||||| |||||||||| ||||| |   ||| || |||||||||||| || |||     
T  20157283 cctatgaagcacggatactcctcaaattaggtgtgtctcggtgtcggacacgcgtcggtgtcggacacgacaccgacacatatgattacactgaattatg 20157382  T
Q  185 tcattttctcaaattatta 203  Q
    | ||||||||| |||||||    
T  20157383 tgattttctcacattatta 20157401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 40747760 - 40747834
Alignment:
Q  139 tcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 213  Q
    ||||||||||||||||||| || |||||| |||||| | || ||| ||||||||||||||||||||  |||||||    
T  40747760 tcggtgtccgacaccaacatgacacctataattacattgaattatgtcattttctcaaattattatccgtgtcgg 40747834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 17831486 - 17831611
Alignment:
Q  110 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgat---acctatgattacactcaaatatatcattttctcaaattattattt 206  Q
    |||||| ||||  ||||||| |||||  |||||||||||||||  ||||||    || |||||||||||| ||  || | |||||||||||||||||       
T  17831486 attaggcgtgtcccggtgtcggacacatgtcggtgtccgacactgacacgacgacacatatgattacactgaataatgtgattttctcaaattattagcg 17831585  T
Q  207 gtgtcggcgtgtcagtgtcgtgtccg 232  Q
    ||||||||||||||||||||| ||||    
T  17831586 gtgtcggcgtgtcagtgtcgtatccg 17831611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 3490426 - 3490470
Alignment:
Q  188 ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    ||||||||||||||||   ||||||||||||||||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagtgtcgtgtccg 3490470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 6427484 - 6427440
Alignment:
Q  188 ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccg 232  Q
    |||| ||||||||||| |||||||||| |||||||||||||||||    
T  6427484 ttttttcaaattattagttgtgtcggcatgtcagtgtcgtgtccg 6427440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 46348400 - 46348456
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||||| ||||| |||||||||||  ||||||||||||||||||||    
T  46348400 attacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtc 46348456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 36878510 - 36878447
Alignment:
Q  162 acctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||| |||||||| || ||| | |||||||||||||||||   |||||||||||||||||||    
T  36878510 acctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 37598856 - 37598818
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  37598856 attttttcaaattattagttgtgtcggcgtgtcagtgtc 37598818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 39101187 - 39101258
Alignment:
Q  157 acgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 230  Q
    |||| |||||| |||||||| || ||| | |||||||||||||||||| |||||||  ||||| ||||||||||    
T  39101187 acgacacctataattacacttaattatgttattttctcaaattattatatgtgtcg--gtgtctgtgtcgtgtc 39101258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 609493 - 609530
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgt 224  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  609493 attttctcaaattattagtggtgtcggcgtgtcagtgt 609530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 10572624 - 10572661
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgt 224  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  10572624 attttctcaaattattagtggtgtcggcgtgtcagtgt 10572661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 45660776 - 45660829
Alignment:
Q  159 gatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcg 212  Q
    |||||||||||||||| |||| |||  ||| |||||||||||||||| ||||||    
T  45660776 gatacctatgattacattcaattatgacatattctcaaattattattggtgtcg 45660829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 1815299 - 1815243
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| | |||| ||||||||||||||||||||||||||    
T  1815299 attacactgaattatgtgattttttaaaataattatttgtgtcggcgtgtcagtgtc 1815243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 24577203 - 24577263
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgt 229  Q
    |||||||| || ||| | ||||| ||||||||||| ||||||| ||||||| |||||||||    
T  24577203 attacactgaattatgtgattttttcaaattattagttgtgtcagcgtgtccgtgtcgtgt 24577263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 38503362 - 38503306
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| |||||||| |||||||||||||||||   ||||||| |||| ||||||    
T  38503362 attacactgaaatatatgattttctcaaattattagcggtgtcggtgtgttagtgtc 38503306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 48040503 - 48040535
Alignment:
Q  193 tcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||||||| ||||||||||||||||||||    
T  48040503 tcaaattattatctgtgtcggcgtgtcagtgtc 48040535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 24343595 - 24343499
Alignment:
Q  123 cggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 219  Q
    ||||||| ||||| |||||||||| |||||| |||||| |||||| |||||||| || ||| | ||||||||||||||||||  |||||||||||||    
T  24343595 cggtgtcggacacgcgtcggtgtcggacaccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgtgtc 24343499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 224
Target Start/End: Original strand, 20743221 - 20743350
Alignment:
Q  101 actcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtc------cgacaccaacacgatacctatgattacactcaaatatatcattttctc 194  Q
    |||| ||| ||||| |||||| ||||||| |||||  |||||||||      ||||||| |||| | ||||||||||||||| || ||| ||||||||||    
T  20743221 actcatcggattagatgtgttccggtgtcggacacgtgtcggtgtctgacatcgacaccgacacaacacctatgattacactgaattatgtcattttctc 20743320  T
Q  195 aaattattatttgtgtcggcgtgtcagtgt 224  Q
    ||||||||||  ||||||||||||||||||    
T  20743321 aaattattatccgtgtcggcgtgtcagtgt 20743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 3144611 - 3144704
Alignment:
Q  110 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    ||||||||||| ||| |||  ||||| ||| |||||| |||||| |||||| ||||||||||||||| || ||||||||||||| ||||||||||    
T  3144611 attaggtgtgtctcg-tgttggacacgcgttggtgtctgacaccgacacgacacctatgattacactaaattatatcattttctgaaattattat 3144704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 225
Target Start/End: Complemental strand, 7012160 - 7012052
Alignment:
Q  123 cggtgtcagacactcgtcggtgtccgacaccaacac------gatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgt 216  Q
    ||||||| || || ||||||||||||||||| ||||      |||||||||||| ||||| || ||| ||||||||||||||||||||  ||||||||||    
T  7012160 cggtgtcggatacgcgtcggtgtccgacaccgacacaacaccgatacctatgatcacactgaattatgtcattttctcaaattattatcggtgtcggcgt 7012061  T
Q  217 gtcagtgtc 225  Q
    ||| |||||    
T  7012060 gtcggtgtc 7012052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 31243500 - 31243626
Alignment:
Q  110 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacac------gatacctatgattacactcaaatatatcattttctcaaattatta 203  Q
    |||||||||||   ||||||  |||| | ||||||||||||||||||||      || ||||||||||||||| || ||| |||||||||||||||||||    
T  31243500 attaggtgtgtcctggtgtcgaacacgcatcggtgtccgacaccaacaccgacatgacacctatgattacactgaattatgtcattttctcaaattatta 31243599  T
Q  204 tttgtgtcggcgtgtcagtgtcgtgtc 230  Q
    |  ||||||  ||| | ||||||||||    
T  31243600 taagtgtcgatgtgcctgtgtcgtgtc 31243626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 53381527 - 53381658
Alignment:
Q  83 aacctatgaaacatgaatactcttcgaattaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaata 182  Q
    |||||||||| || | | |||| ||| |||||||||||  ||||||| || || |||| |||||||||||| ||||||  ||||| |||||||| ||       
T  53381527 aacctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacaccgacacgacgcctataattacactgaa--- 53381623  T
Q  183 tatcattttctcaaattattatttgtgtcggcgtgt 218  Q
      ||||||||| ||||||||||  ||||||||||||    
T  53381624 -ttcattttcttaaattattatcggtgtcggcgtgt 53381658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 6274009 - 6273936
Alignment:
Q  146 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtc 219  Q
    |||||||| ||||||   |||| |||||||| || |||||||||||||||||||||| | |||||| |||||||    
T  6274009 ccgacaccgacacgacgactataattacactaaattatatcattttctcaaattattgtctgtgtcagcgtgtc 6273936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 204
Target Start/End: Original strand, 18513213 - 18513293
Alignment:
Q  124 ggtgtcagacactcgtcggtgtccgacaccaacac-gatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    |||||| ||||| |||||||||||||||| ||||| || || |||||||||| | || ||| ||||||||||||||||||||    
T  18513213 ggtgtcggacacacgtcggtgtccgacac-aacactgacacatatgattacattgaattatgtcattttctcaaattattat 18513293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 23386216 - 23386127
Alignment:
Q  141 ggtgtccgacaccaacacgatacctatgattacactcaaatatatca-ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgt 229  Q
    ||||||||||||| ||| || ||||||||||||||| || ||||||| |||| | ||||||| ||  || |||||| |||||||||||||    
T  23386216 ggtgtccgacaccgacatgacacctatgattacactaaattatatcattttttttaaattatcatccgtatcggcgagtcagtgtcgtgt 23386127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 16303283 - 16303339
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||||||||||| ||||| |||||| | ||||||||||||||||||    
T  16303283 attacactaaattatatcattttttcaaaatattatctttgtcggcgtgtcagtgtc 16303339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 49659533 - 49659573
Alignment:
Q  162 acctatgattacactcaaatatatcattttctcaaattatt 202  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  49659533 acctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 12895309 - 12895342
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtca 220  Q
    ||||| ||||||||||||||||||||||||||||    
T  12895309 attttttcaaattattatttgtgtcggcgtgtca 12895342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 20521836 - 20521922
Alignment:
Q  137 cgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||||||||||||| |||||| ||  |||||| || | || ||| | ||||| ||||||||||||  || ||||||||||||||||    
T  20521836 cgtcggtgtccgacaccgacacgacac--atgatttcattgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtc 20521922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 19482686 - 19482654
Alignment:
Q  193 tcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||||||| |||||||||||||||||||||    
T  19482686 tcaaattattagttgtgtcggcgtgtcagtgtc 19482654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 21945545 - 21945489
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| ||||||| |||||||||||  ||||||||| ||||||||||    
T  21945545 attacactgaattatgtcattttttcaaattattagctgtgtcggcatgtcagtgtc 21945489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 36635366 - 36635310
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||||||||||||||| | |||| ||||||||||||||    
T  36635366 attacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtc 36635310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 50848313 - 50848361
Alignment:
Q  162 acctatgattacactcaaatatatcattttctcaaattattatttgtgt 210  Q
    ||||| ||||||||| || ||||||||||| ||||||||||||| ||||    
T  50848313 acctacgattacactgaattatatcattttttcaaattattattggtgt 50848361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 14513132 - 14513241
Alignment:
Q  110 attaggtgtgtttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtg 209  Q
    |||||||||||| ||||||| ||||  |||||||||| |||||| |||| | | |||||||||| || || ||| | |||||||||||||||||||| ||    
T  14513132 attaggtgtgttccggtgtcggacatgcgtcggtgtctgacaccgacaccaaatctatgattacgctgaattatgtaattttctcaaattattatttttg 14513231  T
Q  210 tcggcgtgtc 219  Q
    | ||||||||    
T  14513232 ttggcgtgtc 14513241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 13845299 - 13845232
Alignment:
Q  146 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 213  Q
    |||||||  |||||| |||||||||||| || || |||||||||||||||||||||||||||||||||    
T  13845299 ccgacacagacacgacacctatgattactctaaattatatcattttctcaaattattatttgtgtcgg 13845232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 3658216 - 3658133
Alignment:
Q  142 gtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||||| |||||||| ||||||||||||||| || || || ||||||||||||||||||  ||||||  ||||| |||||    
T  3658216 gtgtccgacatcaacacgacacctatgattacactgaactacattattttctcaaattattatccgtgtcgatgtgtcggtgtc 3658133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 44067580 - 44067501
Alignment:
Q  147 cgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcg 226  Q
    ||||||| |||||| || ||| ||||||||  | ||| ||||||||||||||||||||  ||||||||||||||||||||    
T  44067580 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtcg 44067501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 39820485 - 39820415
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||| ||||||||||||||| || ||||||||||||||||||||||||  | ||| ||||||| |||||    
T  39820485 acacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcagcgtgtcggtgtc 39820415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 35431143 - 35431192
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    |||||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  35431143 acacgacacctatgattacactaaaatatgtcattttctcaaattattat 35431192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 11815870 - 11815810
Alignment:
Q  170 ttacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 230  Q
    ||||| |||| |||| |||||||||||||||||||| |||||  |||||||||||||||||    
T  11815870 ttacattcaattataacattttctcaaattattattggtgtcaacgtgtcagtgtcgtgtc 11815810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 40064014 - 40063933
Alignment:
Q  148 gacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtcc 231  Q
    |||||| ||||||  |||||||||||| | || ||| ||||||||||||||||||||| ||||||  ||||| |||||||||||    
T  40064014 gacaccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattattggtgtcg--gtgtccgtgtcgtgtcc 40063933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 28883888 - 28883951
Alignment:
Q  162 acctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||||| |||| || ||| ||||||||||||||||||||| ||| |||| ||||||||||    
T  28883888 acctatgattccactgaattatgtcattttctcaaattattattcgtggcggcatgtcagtgtc 28883951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 15816113 - 15816202
Alignment:
Q  142 gtgtccgacaccaacacgatacc------tatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||||||||||||||| |||      ||| |||||||| || ||| | ||||| ||||||||||| |||||||||||||||||||||    
T  15816113 gtgtccgacaccaacacgacaccgacacttataattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtc 15816202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 1676768 - 1676719
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    |||||| ||||||||||||||| |||||| |||||||| |||||||||||    
T  1676768 acacgacacctatgattacactaaaatatgtcattttcacaaattattat 1676719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 13844613 - 13844674
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtc 230  Q
    ||||||||||| ||| | |||||||||||||||||   ||||||||||||| ||||||||||    
T  13844613 attacactcaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgtcgtgtc 13844674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 4673442 - 4673498
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || | ||| ||||| |||||||||||| ||||||||||||||||||||    
T  4673442 attacactgaattttatgattttttcaaattattatctgtgtcggcgtgtcagtgtc 4673498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 4786355 - 4786415
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgt 229  Q
    |||||||| || ||| | ||||||| ||||||||| | |||||||||||||||||||||||    
T  4786355 attacactgaattatgtgattttcttaaattattaatggtgtcggcgtgtcagtgtcgtgt 4786415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 8017577 - 8017493
Alignment:
Q  120 tttcggtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    ||||||||||||| |   |||||||||| ||||  |||||| | |||||||||||||||| ||| ||||||| ||| ||||||||    
T  8017577 tttcggtgtcagataggtgtcggtgtccaacactgacacgacatctatgattacactcaattatgtcattttttcatattattat 8017493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 12559114 - 12559157
Alignment:
Q  160 atacctatgattacactcaaatatatcattttctcaaattatta 203  Q
    |||| |||||||||||| || |||||||||||||||||||||||    
T  12559114 atacatatgattacactgaattatatcattttctcaaattatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 36450789 - 36450827
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  36450789 attttttcaaattattagttgtgtcggcgtgtcagtgtc 36450827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 18130531 - 18130600
Alignment:
Q  151 accaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtca 220  Q
    ||||||| || |||| || ||||||| || | |||||||||||||| ||||||| |||||||| ||||||    
T  18130531 accaacatgacacctctggttacacttaattgtatcattttctcaacttattatctgtgtcggtgtgtca 18130600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 13009490 - 13009554
Alignment:
Q  149 acaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcgg 213  Q
    ||||| |||||| || |||||||||||| || |||||  |||||||||||||||||  |||||||    
T  13009490 acaccgacacgacacttatgattacactaaattatattgttttctcaaattattatccgtgtcgg 13009554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 14227246 - 14227202
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtcc 231  Q
    ||||||||||||||||||| |||| | |||||||||| |||||||    
T  14227246 attttctcaaattattattggtgttgacgtgtcagtgacgtgtcc 14227202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 20873111 - 20873055
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| |||||||||||| | ||||||||||||||||||    
T  20873111 attacactaaattatgtgattttttcaaattattatctatgtcggcgtgtcagtgtc 20873055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 225
Target Start/End: Original strand, 225263 - 225341
Alignment:
Q  147 cgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||||||||| || ||| |||||| |  | ||| |||||||||||||||||||| ||||||||||||||||||||    
T  225263 cgacaccaacacgacacttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtc 225341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 8047 - 8126
Alignment:
Q  146 ccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||| ||| |||||||||||||| ||||||| || ||| ||||||||||||||||||||  || ||| |||||| |||||    
T  8047 ccgaaaccgacacgatacctatgtttacactgaattatgtcattttctcaaattattatccgtatcgacgtgtcggtgtc 8126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 13424 - 13386
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  13424 attttctcaaattattagttgtgtcggcgtgtcagtgtc 13386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 21903 - 21941
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  21903 attttctcaaattattagttgtgtcggcgtgtcagtgtc 21941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 2005 - 1956
Alignment:
Q  155 acacgatacctatgattacactcaaatatatcattttctcaaattattat 204  Q
    |||||| ||||||||||||||| |||||| |||||||| |||||||||||    
T  2005 acacgacacctatgattacactaaaatatgtcattttcacaaattattat 1956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 71746 - 71701
Alignment:
Q  188 ttttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccga 233  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||    
T  71746 ttttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccga 71701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 8040 - 7988
Alignment:
Q  181 tatatcattttctcaaattattatttgtgtcggcgtgtcagtgtcgtgtccga 233  Q
    ||||| ||||| ||||||||||| ||||||||||||||| || ||||||||||    
T  8040 tatatgattttttcaaattattagttgtgtcggcgtgtctgtatcgtgtccga 7988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 4477 - 4403
Alignment:
Q  140 cggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttctcaaattattatttgtgtcggc 214  Q
    ||||||||||||| | ||||| | ||||||| ||||| || |||||||| |||| |||||||||| ||| |||||    
T  4477 cggtgtccgacactagcacgacatctatgatgacactgaattatatcatattcttaaattattatctgtttcggc 4403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 35715 - 35677
Alignment:
Q  112 taggtgtgtttcggtgtcagacactcgtcggtgtccgac 150  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  35715 taggtgtgtttcggtgtcagacacgcgttggtgtccgac 35677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 178854 - 178892
Alignment:
Q  187 attttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  178854 attttttcaaattattagttgtgtcggcgtgtcagtgtc 178892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 51853 - 51797
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | ||||| |||||||||||  ||||||||||||||||||||    
T  51853 attacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtc 51797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 8840 - 8784
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| ||  |||| ||||| |||||||||||  ||||||||||||||||||||    
T  8840 attacactaaataatatgattttttcaaattattagctgtgtcggcgtgtcagtgtc 8784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 56968 - 56932
Alignment:
Q  165 tatgattacactcaaatatatcattttctcaaattat 201  Q
    |||||||||||| || |||||||||||||||||||||    
T  56968 tatgattacactgaattatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 90885 - 90829
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||||| ||||||||||||||||| | |||| || |||||||||||    
T  90885 attacactgaattatatgattttctcaaattattaatggtgttggtgtgtcagtgtc 90829  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 92849 - 92793
Alignment:
Q  169 attacactcaaatatatcattttctcaaattattatttgtgtcggcgtgtcagtgtc 225  Q
    |||||||| || ||| | |||||||||||||||||   |||||||||||||||||||    
T  92849 attacactgaattatgtaattttctcaaattattagcggtgtcggcgtgtcagtgtc 92793  T

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