View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_low_33 (Length: 244)
Name: NF3211_low_33
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 39671627 - 39671407
Alignment:
| Q |
1 |
aatcatggacctagatcacctgctgtaaatgtttcacgcagttacacgcacttaatagctgatctaaaccgtagaagagtgagagtgattcaacagtccg |
100 |
Q |
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| T |
39671627 |
aatcatggatctagatcacctgctgtaaatgcttcacgcagttacacgcatttaatagctgatctgaactttagaagagtga------ttcaacagtccg |
39671534 |
T |
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| Q |
101 |
cattgtaggaaacttcttattnnnnnnntttatatacaaaagaggcactttcaaaggtgcattgttattccaaataatgtcacaatatgaataatattca |
200 |
Q |
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| T |
39671533 |
cattgtaggaaacttgttattaaaaaaatttatatacaaaagaggcactttcaaaggtgcatttttattccaaataatgtcacaatatgaataatattca |
39671434 |
T |
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| Q |
201 |
aatatatgatatgttcttgacaccttat |
228 |
Q |
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| T |
39671433 |
aatatatga-atgttcttgacaccttat |
39671407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 43681905 - 43681942
Alignment:
| Q |
5 |
atggacctagatcacctgctgtaaatgtttcacgcagt |
42 |
Q |
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| T |
43681905 |
atggacctagatcgcctgctgtaaatgcttcacgcagt |
43681942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 5859001 - 5859040
Alignment:
| Q |
7 |
ggacctagatcacctgctgtaaatgtttcacgcagttaca |
46 |
Q |
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| T |
5859001 |
ggacctagatcccctgctctaaatgtttcacgcagttaca |
5859040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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