View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_low_36 (Length: 239)
Name: NF3211_low_36
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11615257 - 11615035
Alignment:
| Q |
1 |
tcttaattgaactatcgtccttatcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11615257 |
tcttaattgaactatcgtccttatcattattaaaaattggctttcatctttcttatatttttctccccatgcttgtattttaaggttcttggcgtatcat |
11615158 |
T |
|
| Q |
101 |
ccagagtacaagaaaaatggtgtaactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11615157 |
ccagagtacaagaaaaatggtgtaactcctgcacggttctcatttgaagtgcctacgccattgcaagaaaactacatgaggaagaagcgctctcatgcta |
11615058 |
T |
|
| Q |
201 |
aatctgttgaacctaagcaaggt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
11615057 |
aatctgttgaacctaagcaaggt |
11615035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 13752484 - 13752285
Alignment:
| Q |
24 |
tcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcatccagagtacaagaaaaatggtgt |
123 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| | ||||| ||||||||| || | ||||||| |
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| T |
13752484 |
tcattattaaattttggctttcatctttcttacattttgctcccggtgcttgtgttttaaggttcttggtgaatcattcagagtacacgacagatggtgt |
13752385 |
T |
|
| Q |
124 |
aactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgctaaatctgttgaacctaagcaaggt |
223 |
Q |
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| T |
13752384 |
tacttctgcacggttctcatttcaaatgcctaagcccttgcaagagaactatgtgaagaagaagcgctctcatgctaaatctgttgaacctaatcaaggt |
13752285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 13765910 - 13765688
Alignment:
| Q |
1 |
tcttaattgaactatcgtccttatcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcat |
100 |
Q |
| |
|
|||||||||||| || ||| | ||||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| | ||||| |
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| T |
13765910 |
tcttaattgaaccattgtcatcttcattattaaattttggctttcatctttcttacattttgctcccggtgcttgtgttttaaggttcttggtgaatcat |
13765811 |
T |
|
| Q |
101 |
ccagagtacaagaaaaatggtgtaactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgcta |
200 |
Q |
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| T |
13765810 |
tcagagtacacgacagatggtgttacttctgcacggttctcatttcaaaagcctaagcccttgcaagagaactatgtgaagaagaagcgctctcatgcta |
13765711 |
T |
|
| Q |
201 |
aatctgttgaacctaagcaaggt |
223 |
Q |
| |
|
|||||||||||||||| |||||| |
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| T |
13765710 |
aatctgttgaacctaaccaaggt |
13765688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 11606079 - 11606280
Alignment:
| Q |
23 |
atcattattaaaaattggctttca-tctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcatccagagtacaagaaaaatggt |
121 |
Q |
| |
|
||||||||||||||| | |||||| ||||||||| |||| | |||| ||||||| ||| ||||||||| || |||||||||||||| || ||||||| |
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| T |
11606079 |
atcattattaaaaatcgcctttcaatctttcttacatttcgttcccggtgcttgtgtttgaaggttctttgccgatcatccagagtacgtgacaaatggt |
11606178 |
T |
|
| Q |
122 |
gtaactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgctaaatctgttgaacctaagcaag |
221 |
Q |
| |
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|||||| ||||||||||||| ||| || |||||| | | |||||||| |||||| || ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11606179 |
gtaacttctgcacggttctcatttcaaatgcctaagcccttgcaagagaactacgtgaagaagaagcgttctcatgctaaatctgttgaacctaagcaag |
11606278 |
T |
|
| Q |
222 |
gt |
223 |
Q |
| |
|
|| |
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|
| T |
11606279 |
gt |
11606280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 13739069 - 13738854
Alignment:
| Q |
2 |
cttaattgaactatcgtccttatcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcatc |
101 |
Q |
| |
|
|||||||||| || ||| | ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||| |
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| T |
13739069 |
cttaattgaatcattgtcatcatcattattaaaatttggctttcatctttcttacattttgctcccggtgcttgtgttttaaggttcttggcagatcatc |
13738970 |
T |
|
| Q |
102 |
cagagtacaagaaaaatggtgtaactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgctaa |
201 |
Q |
| |
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||||||| | || | |||||||||||| | | |||||||| ||| || |||| ||| |||||||| ||| ||| |||||||||||||||||| |
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| T |
13738969 |
cagagtatatgacagatggtgtaactctttcgcggttctcatttaaaagacctaagtc---gcaagaaagctatgtgag---gaagcgctctcatgctaa |
13738876 |
T |
|
| Q |
202 |
atctgttgaacctaagcaaggt |
223 |
Q |
| |
|
||| ||||||| |||||||||| |
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|
| T |
13738875 |
atcggttgaacataagcaaggt |
13738854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35079777 - 35079996
Alignment:
| Q |
1 |
tcttaattgaactatcgtccttatcattattaaaaattggctttcatctttcttatattttgctccccatgcttgtattttaaggttcttggcgtatcat |
100 |
Q |
| |
|
||||||||||| ||| || | ||||||||||| || | ||||||||||||||| |||||||||| ||||||| ||||||| ||||||||| | ||| |
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|
| T |
35079777 |
tcttaattgaattattgttatcatcattattaatcatcgtctttcatctttcttacattttgctcctggtgcttgtgttttaagattcttggcggaacat |
35079876 |
T |
|
| Q |
101 |
ccagagtacaagaaaaatggtgtaactcctgcacggttctcgtttgaagtgcctacgtcattgcaagaaaactacacgaggaagaagcgctctcatgcta |
200 |
Q |
| |
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|| ||||||| || | |||||||||||||||||||||||| || || | |||| | |||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
35079877 |
cctgagtacatgacagctggtgtaactcctgcacggttctcattccaaattcctaagccattgcaagaaaactatgtgag---gaagcgctctcatgcta |
35079973 |
T |
|
| Q |
201 |
aatctgttgaacctaagcaaggt |
223 |
Q |
| |
|
||||| |||||||| |||||||| |
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|
| T |
35079974 |
aatctattgaacctgagcaaggt |
35079996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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