View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_low_39 (Length: 237)
Name: NF3211_low_39
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37987278 - 37987499
Alignment:
| Q |
1 |
tcctcaagagtacaacactttccctctaaatcaaagaaccatgtgtttcatcaagctggtgcaaatgttgatgctgttgatagatttaaaaaagcagaag |
100 |
Q |
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| T |
37987278 |
tcctcaagagtacaacactttccctctaaatcaaagaaccatgtgtttcatcaagctggtgcaaatgttgatgctgttgatagatttaaaaaagcagaag |
37987377 |
T |
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| Q |
101 |
aatctcttagaactgtgatgtacttgagttgctggggtcctaactaaaggttaattaaattatcatatatatagctaatgttttagtagtgatttttgaa |
200 |
Q |
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| T |
37987378 |
aatctcttagaactgtgatgtacttgagttgctggggtcctaactaaaggttaattaaattatcatatatatagctaatgttttagtagtgatttttgaa |
37987477 |
T |
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| Q |
201 |
aatatatgtagtagctgaatgt |
222 |
Q |
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| T |
37987478 |
aatatatgtagtagctgaatgt |
37987499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 38022065 - 38022119
Alignment:
| Q |
95 |
cagaagaatctcttagaactgtgatgtacttgagttgctggggtcctaactaaag |
149 |
Q |
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| T |
38022065 |
cagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaactaaag |
38022119 |
T |
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