View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3211_low_4 (Length: 569)
Name: NF3211_low_4
Description: NF3211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3211_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 39 - 303
Target Start/End: Original strand, 2569281 - 2569543
Alignment:
| Q |
39 |
aatattggtatttatataaaaaaggcaaaagagaaaccaattaataattagataagagaacaaaaatcacact--ggtttccaattatattacatgatgt |
136 |
Q |
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| T |
2569281 |
aatagtggtatttatagaaaaaaggcaaaagagaaaccaattaataattagataagagaacaaaaatcacactatggtttccaattatattacatgatgt |
2569380 |
T |
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| Q |
137 |
tatcataaaggaatctcctagagagtttctttaaaataaaaaatctccttgagagttggtcactataattaacttttacaatttattgtactaatttgaa |
236 |
Q |
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| T |
2569381 |
tatcataaaggaatctcctagagagtttctttaaaagaaaaaatctccttgagagttggtcactataattaacttttacaatttattgtactaatt---a |
2569477 |
T |
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| Q |
237 |
ttcactcttttatatttgtgcatatttcttaacaaactccaaaaagacataatgaatatttgcactg |
303 |
Q |
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| T |
2569478 |
ttcactcttttatatttgtgcat-tttcttaacaaactccaaaaagacataatgaatatttgcactg |
2569543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 375 - 555
Target Start/End: Original strand, 2569616 - 2569795
Alignment:
| Q |
375 |
aaattcgaacccattctgcatacccatttttagcgttccannnnnnngttgttgcacattttgtgctataattttttccgacgtattataggtggatgtg |
474 |
Q |
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| T |
2569616 |
aaattcgaacccattctgcatacccatttttagcgttccatttctttgttgttgcacattttgtgctataatttt-tccgacgtattataggtggatatg |
2569714 |
T |
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| Q |
475 |
tttataaacgaggttatgacaattttgttcataaatttacacacaagaacttaattcacatacacctcaattcacacaggt |
555 |
Q |
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| T |
2569715 |
tttataaacgaggttatgacaattttgttcataaatttacacacaagaacttaattcacatacacctcaattcacacaggt |
2569795 |
T |
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